Factsheet for PGSC0003DMT400023249

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
cytosol 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023249
PGSC0003DMT400031937
PGSC0003DMT400036615
PGSC0003DMT400047710
PGSC0003DMT400063543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62600.1	PGSC0003DMT400063543	AT1G09080.1	19763086
AT3G62600.1	PGSC0003DMT400036615	AT2G25110.1	19763086
AT3G62600.1	PGSC0003DMT400023249	AT3G62600.1	19763086
AT3G62600.1	PGSC0003DMT400031937	AT5G28540.1	19763086
AT3G62600.1	PGSC0003DMT400047710	AT5G28540.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079610.2.1	Tomato	nucleus	99.13	99.13
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	84.93	84.93
Bra007687.1-P	Field mustard	golgi	80.0	79.77
CDX76646	Canola	golgi	80.0	79.77
CDY11430	Canola	golgi	80.0	79.77
CDY63310	Canola	endoplasmic reticulum	79.71	79.25
CDX89142	Canola	endoplasmic reticulum	79.71	79.25
CDY59898	Canola	endoplasmic reticulum, golgi	79.42	78.96
AT3G62600.1	Thale cress	endoplasmic reticulum, golgi	79.13	78.9
Os05t0156500-01	Rice	cytosol, nucleus	33.04	78.08
GSMUA_Achr8P33890_001	Banana	endoplasmic reticulum	77.68	77.91
EES17752	Sorghum	endoplasmic reticulum, golgi	78.26	77.14
CDX67894	Canola	endoplasmic reticulum, golgi	73.04	77.06
TraesCS1B01G125100.1	Wheat	nucleus	77.68	76.57
TraesCS1D01G107200.1	Wheat	nucleus	77.39	76.29
Zm00001d009783_P004	Maize	mitochondrion	76.81	75.71
TraesCS1A01G099300.1	Wheat	nucleus	76.81	75.71
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	78.84	72.92
Zm00001d037586_P001	Maize	endoplasmic reticulum	75.94	71.39
Bra003501.1-P	Field mustard	nucleus	75.07	69.81
KRH55068	Soybean	cytosol	27.54	69.34
KXG32445	Sorghum	endoplasmic reticulum	66.96	66.76
HORVU1Hr1G022990.1	Barley	cytosol	75.07	60.94
Zm00001d009210_P001	Maize	endoplasmic reticulum	59.71	50.74
Bra014400.1-P	Field mustard	golgi	77.97	40.27
PGSC0003DMT400059397	Potato	cytosol	35.94	36.47
PGSC0003DMT400081223	Potato	cytosol	35.07	35.48
PGSC0003DMT400007444	Potato	cytosol	31.59	35.16
PGSC0003DMT400045398	Potato	mitochondrion	31.01	34.41
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	33.62	33.92
PGSC0003DMT400083824	Potato	cytosol	30.43	32.41
PGSC0003DMT400005019	Potato	cytosol	39.13	32.22
PGSC0003DMT400083040	Potato	cytosol	31.3	32.05
PGSC0003DMT400060145	Potato	cytosol	38.26	31.5
PGSC0003DMT400065401	Potato	nucleus	37.97	31.26
PGSC0003DMT400007728	Potato	nucleus	37.68	31.03
PGSC0003DMT400066980	Potato	nucleus	35.65	29.29
PGSC0003DMT400018083	Potato	nucleus	35.07	28.88
PGSC0003DMT400062759	Potato	cytosol	23.77	23.63
PGSC0003DMT400032760	Potato	plastid	28.41	22.02
PGSC0003DMT400064990	Potato	mitochondrion	25.51	19.86
PGSC0003DMT400036786	Potato	plastid	25.51	16.54
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	15.65	14.03

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102605081	MapMan:19.1.1.2.1.2	Gene3D:2.60.260.20	InterPro:DnaJ_C	InterPro:DnaJ_domain
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M1AI12
PFAM:PF00226	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400009004	PGSC:PGSC0003DMG400009004	EnsemblPlants:PGSC0003DMT400023249	PRINTS:PR00625
PFscan:PS50076	PANTHER:PTHR43888	PANTHER:PTHR43888:SF14	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000296872F	RefSeq:XP_006349203.1	SEG:seg	:

Description

Chaperone protein dnaJ [Source:PGSC_GENE;Acc:PGSC0003DMG400009004]

Coordinates

chr1:+:62441415..62448611

Molecular Weight (calculated)

39258.0 Da

IEP (calculated)

6.999

GRAVY (calculated)

-0.666

Length

345 amino acids

Sequence
(BLAST)

001: MAHRRSKLLI LLCCLSYTLS IAIAAKSYYD ILQIPKGASD EQIKRAYRKL ALKYHPDKNQ GNEEANKKFA EISNAYEVIS DSEKRNIYDR YGEEGLKQHA
101: ASGGRGGGMN MQDIFSQFFG GGSMEEEEEK IVKGDDVIVD LDATLEDLYM GGSLKVWREK NVLKPAPGKR KCNCRNEVYH RQIGPGMYQQ MTEQVCDKCP
201: NVKFEREGYH ITVDIEKGMQ DGQEVVFYED GEPKIDGEPG DLKFRIRTAP HEQFTREVND LRTTVTITLV QALVGFEKTI KHLDDHLVDI SSKGITKPKE
301: VRKFKGEGMP LHYSNKKGDL YVKFEVLFPT SLTEDQKKQI KEVLG

Best Arabidopsis Sequence Match ( AT3G62600.1 )
(BLAST)

001: MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA

Arabidopsis Description

ERDJ3BDnaJ protein ERDJ3B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZK5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.