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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
YLoc:cytosol
 endoplasmic reticulum: 24153418
nucleus: 18022940
nucleus: 18203134
cytosol: 19685898
golgi: 25047511
plasma membrane: 27800704
gfp PMID: 24153418 doi
M Ohta, Y Wakasa, H Takahashi, S Hayashi, K Kudo, F Takaiwa
Functional Transgenic Crops Research Unit, Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan.
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0115900-02
Os03t0710500-00
Os05t0156500-01
Os08t0278900-01
Os08t0440500-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62600.1 Os03t0710500-00 AT1G09080.1 19763086
AT3G62600.1 Os08t0278900-01 AT2G25110.1 19763086
AT3G62600.1 Os08t0440500-01 AT2G25110.1 19763086
AT3G62600.1 Os05t0156500-01 AT3G62600.1 19763086
AT3G62600.1 Os02t0115900-02 AT5G28540.1 19763086
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH55068 Soybean cytosol 60.96 64.96
EES17752 Sorghum endoplasmic reticulum, golgi 90.41 37.71
TraesCS1B01G125100.1 Wheat nucleus 89.73 37.43
TraesCS1D01G107200.1 Wheat nucleus 89.73 37.43
TraesCS1A01G099300.1 Wheat nucleus 89.04 37.14
Zm00001d009783_P004 Maize mitochondrion 88.36 36.86
Zm00001d037586_P001 Maize endoplasmic reticulum 87.67 34.88
GSMUA_Achr8P33890_001 Banana endoplasmic reticulum 81.51 34.59
KXG32445 Sorghum endoplasmic reticulum 80.82 34.1
VIT_07s0005g01220.t01 Wine grape endoplasmic reticulum, golgi, vacuole 79.45 33.62
PGSC0003DMT400023249 Potato endoplasmic reticulum, golgi 78.08 33.04
GSMUA_Achr11P... Banana cytosol, endoplasmic reticulum, vacuole 84.25 32.98
Solyc01g079610.2.1 Tomato nucleus 77.4 32.75
CDY63310 Canola endoplasmic reticulum 73.29 30.84
CDX89142 Canola endoplasmic reticulum 73.29 30.84
HORVU1Hr1G022990.1 Barley cytosol 89.73 30.82
AT3G62600.1 Thale cress endoplasmic reticulum, golgi 72.6 30.64
CDY59898 Canola endoplasmic reticulum, golgi 72.6 30.55
CDY11430 Canola golgi 71.23 30.06
CDX76646 Canola golgi 71.23 30.06
Bra007687.1-P Field mustard golgi 71.23 30.06
Bra003501.1-P Field mustard nucleus 72.6 28.57
Os05t0427900-01 Rice cytosol 30.14 27.85
Zm00001d009210_P001 Maize endoplasmic reticulum 74.66 26.85
CDX67894 Canola endoplasmic reticulum, golgi 58.22 25.99
Bra014400.1-P Field mustard golgi 73.97 16.17
Os01t0239100-02 Rice cytoskeleton, cytosol, nucleus 36.3 15.19
Os02t0306900-01 Rice cytosol 36.3 15.19
Os05t0562300-01 Rice nucleus 36.3 14.64
Os01t0875700-01 Rice cytosol 31.51 14.07
Os04t0549600-01 Rice cytosol 38.36 13.46
Os08t0161900-01 Rice cytosol 30.82 13.16
Os03t0787300-01 Rice plasma membrane 36.99 12.95
Os02t0656500-01 Rice nucleus 36.99 12.86
Os03t0648400-02 Rice nucleus 36.3 12.71
Os02t0128400-01 Rice cytosol 28.77 12.39
Os12t0619100-00 Rice cytosol 33.56 11.4
Os08t0374400-00 Rice plastid 29.45 11.05
Os12t0168400-01 Rice plastid 25.34 8.83
Os06t0116800-01 Rice mitochondrion 25.34 8.37
Os02t0804500-01 Rice plastid 26.03 7.8
Os05t0334400-01 Rice mitochondrion, plastid 21.92 7.16
Os05t0334000-01 Rice mitochondrion, plastid 21.92 7.16
Os05t0333500-01 Rice mitochondrion, plastid 21.92 7.16
Protein Annotations
Gene3D:2.60.260.20MapMan:35.1InterPro:DnaJ_CGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005788
GO:GO:0006457GO:GO:0008150GO:GO:0009987GO:GO:0051082InterPro:HSP40/DnaJ_pept-bdEnsemblPlantsGene:Os05g0156500
EnsemblPlants:Os05t0156500-01PFAM:PF01556PANTHER:PTHR43888PANTHER:PTHR43888:SF14SUPFAM:SSF49493UniParc:UPI0000E1235C
Description
ERdj3B-like gene, ERDJ3 like, ERDJ3 like gene, DnaJ domain protein B6, ER-resident J-protein 3BSimilar to Apobec-1 binding protein 2. (Os05t0156500-01)
Coordinates
chr5:+:3305712..3307705
Molecular Weight (calculated)
16657.0 Da
IEP (calculated)
7.834
GRAVY (calculated)
-0.640
Length
146 amino acids
Sequence
(BLAST)
001: ANVKYVREGD FLTVDIEKGM QDGQEVSFFE EGEPKIDGEP GDLKFRIRTA PHERFRREGN DLHTTVTISL LQALVGFEKT IKHLDNHMVE IGTKGITKPK
101: EVRKFKGEGM PLYQSNKKGD LYVTFEVLFP KTLTDDQKSK LKSILT
Best Arabidopsis Sequence Match ( AT3G62600.1 )
(BLAST)
001: MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA
Arabidopsis Description
ERDJ3BDnaJ protein ERDJ3B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZK5]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.