Factsheet for Solyc01g079610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
endoplasmic reticulum 6
extracellular 4
vacuole 4
plasma membrane 4
golgi 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079610.2.1
Solyc01g099660.2.1
Solyc03g117020.2.1
Solyc06g052050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62600.1	Solyc01g099660.2.1	AT1G09080.1	19763086
AT3G62600.1	Solyc03g117020.2.1	AT2G25110.1	19763086
AT3G62600.1	Solyc01g079610.2.1	AT3G62600.1	19763086
AT3G62600.1	Solyc06g052050.2.1	AT5G28540.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	99.13	99.13
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	85.22	85.22
Bra007687.1-P	Field mustard	golgi	80.0	79.77
CDX76646	Canola	golgi	80.0	79.77
CDY11430	Canola	golgi	80.0	79.77
CDX89142	Canola	endoplasmic reticulum	79.71	79.25
CDY63310	Canola	endoplasmic reticulum	79.71	79.25
CDY59898	Canola	endoplasmic reticulum, golgi	79.42	78.96
AT3G62600.1	Thale cress	endoplasmic reticulum, golgi	79.13	78.9
GSMUA_Achr8P33890_001	Banana	endoplasmic reticulum	77.39	77.62
Os05t0156500-01	Rice	cytosol, nucleus	32.75	77.4
CDX67894	Canola	endoplasmic reticulum, golgi	73.04	77.06
TraesCS1B01G125100.1	Wheat	nucleus	77.97	76.86
EES17752	Sorghum	endoplasmic reticulum, golgi	77.68	76.57
TraesCS1D01G107200.1	Wheat	nucleus	77.68	76.57
TraesCS1A01G099300.1	Wheat	nucleus	77.1	76.0
Zm00001d009783_P004	Maize	mitochondrion	76.23	75.14
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	78.55	72.65
Zm00001d037586_P001	Maize	endoplasmic reticulum	75.65	71.12
KRH55068	Soybean	cytosol	27.83	70.07
Bra003501.1-P	Field mustard	nucleus	75.07	69.81
KXG32445	Sorghum	endoplasmic reticulum	66.67	66.47
HORVU1Hr1G022990.1	Barley	cytosol	75.36	61.18
Zm00001d009210_P001	Maize	endoplasmic reticulum	59.13	50.25
Bra014400.1-P	Field mustard	golgi	78.26	40.42
Solyc09g005350.2.1	Tomato	nucleus, plastid	35.65	36.18
Solyc02g077670.2.1	Tomato	cytosol	35.65	35.86
Solyc05g006820.2.1	Tomato	plastid	31.3	34.73
Solyc04g005820.2.1	Tomato	cytosol, nucleus	31.88	34.38
Solyc11g006460.1.1	Tomato	nucleus	39.13	32.22
Solyc04g009770.2.1	Tomato	nucleus	38.26	31.58
Solyc05g055160.2.1	Tomato	nucleus	38.26	31.5
Solyc06g071110.2.1	Tomato	nucleus	30.72	31.45
Solyc11g071830.1.1	Tomato	plastid	37.97	31.34
Solyc07g053620.2.1	Tomato	nucleus	20.29	31.25
Solyc01g090550.2.1	Tomato	nucleus	35.94	29.25
Solyc10g084300.1.1	Tomato	nucleus	21.16	27.65
Solyc05g050810.2.1	Tomato	nucleus	20.58	27.63
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	20.87	26.37
Solyc01g105340.2.1	Tomato	plastid	25.8	25.21
Solyc11g044450.1.1	Tomato	nucleus	23.19	23.26
Solyc05g050820.2.1	Tomato	cytosol	14.49	21.01
Solyc01g086740.2.1	Tomato	mitochondrion	26.09	20.32
Solyc03g116790.2.1	Tomato	plastid	28.41	19.68
Solyc03g118500.2.1	Tomato	plastid	26.09	16.92
Solyc01g081330.2.1	Tomato	plastid	21.16	16.82
Solyc06g060240.1.1	Tomato	cytosol	15.36	13.8

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.1.2.1.2	Gene3D:2.60.260.20	InterPro:DnaJ_C	InterPro:DnaJ_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4AXK6	PFAM:PF00226
PFAM:PF01556	PRINTS:PR00625	PFscan:PS50076	PANTHER:PTHR43888	PANTHER:PTHR43888:SF14	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	SignalP:SignalP-TM	EnsemblPlantsGene:Solyc01g079610.2	EnsemblPlants:Solyc01g079610.2.1	TMHMM:TMhelix
UniParc:UPI0002761F2A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:78713087..78719065

Molecular Weight (calculated)

39242.0 Da

IEP (calculated)

6.999

GRAVY (calculated)

-0.654

Length

345 amino acids

Sequence
(BLAST)

001: MAHRRSKLLI LLCCLSYTLS IAIAAKSYYD ILQIPKGASD EQIKRAYRKL ALKYHPDKNQ GNEEANKKFA EISNAYEVIS DSEKRNIYDR YGEEGLKQHA
101: ASGGRGGGMN MQDIFSQFFG GGSMEEEEEK IVKGDDVIVD LDATLEDLYM GGSLKVWREK NILKPAPGKR KCNCRNEVYH RQIGPGMFQQ MTEQVCDKCP
201: NVKFEREGYH ITVDIEKGMQ DGQEVVFYED GEPKIDGEPG DLKFRIRTAP HDQFTREVND LRTTVTITLV QALVGFEKTI KHLDDHLVDI SSKGITKPKE
301: VRKFKGEGMP LHYSNKKGDL YVKFEVLFPT SLTEDQKKQI KEVLG

Best Arabidopsis Sequence Match ( AT3G62600.1 )
(BLAST)

001: MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA

Arabidopsis Description

ERDJ3BDnaJ protein ERDJ3B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZK5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.