Factsheet for Solyc03g118500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036786	Potato	plastid	95.49	95.49
VIT_17s0000g02030.t01	Wine grape	plastid	53.76	59.46
Bra022249.1-P	Field mustard	cytosol, mitochondrion, plastid	46.24	53.71
KRH48662	Soybean	nucleus, plastid	52.63	53.33
CDX95817	Canola	plastid	48.31	51.09
CDX92166	Canola	plastid	47.93	50.49
AT3G17830.1	Thale cress	plastid	46.99	48.36
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	48.87	47.71
Solyc01g105340.2.1	Tomato	plastid	29.51	44.48
TraesCS4B01G241700.1	Wheat	plastid	43.05	42.8
TraesCS4A01G064300.2	Wheat	plastid	43.05	42.41
TraesCS4D01G241300.2	Wheat	plastid	42.48	41.85
OQU92981	Sorghum	plastid	42.11	41.56
Zm00001d028256_P002	Maize	plastid	41.92	41.45
HORVU4Hr1G066920.5	Barley	mitochondrion	42.86	40.14
Solyc03g116790.2.1	Tomato	plastid	35.53	37.95
Solyc02g077670.2.1	Tomato	cytosol	18.8	29.15
Solyc01g086740.2.1	Tomato	mitochondrion	23.87	28.67
Solyc11g071830.1.1	Tomato	plastid	21.99	27.99
Solyc05g055160.2.1	Tomato	nucleus	21.99	27.92
Solyc07g053620.2.1	Tomato	nucleus	11.65	27.68
Solyc05g050810.2.1	Tomato	nucleus	13.35	27.63
Solyc09g005350.2.1	Tomato	nucleus, plastid	17.48	27.35
Solyc05g006820.2.1	Tomato	plastid	15.98	27.33
Solyc11g006460.1.1	Tomato	nucleus	21.24	26.97
Solyc01g090550.2.1	Tomato	nucleus	21.24	26.65
Solyc04g005820.2.1	Tomato	cytosol, nucleus	15.98	26.56
Solyc04g009770.2.1	Tomato	nucleus	20.86	26.55
Solyc01g081330.2.1	Tomato	plastid	21.62	26.5
Solyc01g079610.2.1	Tomato	nucleus	16.92	26.09
Solyc06g071110.2.1	Tomato	nucleus	16.17	25.52
Solyc05g050820.2.1	Tomato	cytosol	8.65	19.33
Solyc11g044450.1.1	Tomato	nucleus	12.03	18.6
Solyc10g084300.1.1	Tomato	nucleus	8.65	17.42
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	8.83	17.22
Solyc06g060240.1.1	Tomato	cytosol	8.27	11.46

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082
InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	UniProt:K4BM01	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096	PANTHER:PTHR43096:SF26
SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	EnsemblPlantsGene:Solyc03g118500.2	EnsemblPlants:Solyc03g118500.2.1
TMHMM:TMhelix	UniParc:UPI0002765FAA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:67342074..67348271

Molecular Weight (calculated)

58261.5 Da

IEP (calculated)

9.766

GRAVY (calculated)

-0.377

Length

532 amino acids

Sequence
(BLAST)

001: MPAIHNPNWL YTASNINTNC SFSTFSFPKT LTFSNSLSHS LKFVSPNPYF VNRKRRGFVT VNAAAKSSSS DLYSVLNVSR NATLQEIKTS YRKLARKYHP
101: DMNKGPGAEE KFKEISAAYE VLSDDEKRSS YDRFGEAGLR GEYDVPGGGP QGVDPFEVFS EYFGQSSAFF GGSGGLGGFN FDFKNTGRQN LDIRYDLDLS
201: FEESIFGGQR DIEVPCLDEC DSCDGTGAKS SSCVKVCSDC GGRGGVVKTQ KTPFGIMSQV STCLKCGGNG KIITDHCRKC GGRGQVQSKR SIKVVVPPGV
301: HDGATMQVRG EGNIDKKSSL SGDLYLVIHV EEKRGIWRDG LNLYSKLDVD FTEAILGTVK KVTTVDGTKN LQIPPGSQPG EKIKMSKMGV PDMNRSSVRG
401: DHVFLITVQI PKNLSDTERT LVEKLASLRA TSKHHSVSSG GERGGVARLW KPIKDFLRSG RSGRKFASIS TETTALQSLN RRLPSFPLIT SLSAVLLGIC
501: ILAFVKVCYS KILLQKRSVK PNFVLHREIK EQ

Best Arabidopsis Sequence Match ( AT3G17830.1 )
(BLAST)

001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET

Arabidopsis Description

At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.