CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028256_P002	Maize	plastid	90.35	90.52
TraesCS4D01G241300.2	Wheat	plastid	68.09	67.96
TraesCS4A01G064300.2	Wheat	plastid	67.9	67.78
TraesCS4B01G241700.1	Wheat	plastid	66.42	66.92
HORVU4Hr1G066920.5	Barley	mitochondrion	67.9	64.44
VIT_17s0000g02030.t01	Wine grape	plastid	42.67	47.82
Bra022249.1-P	Field mustard	cytosol, mitochondrion, plastid	38.96	45.85
KRH48662	Soybean	nucleus, plastid	43.04	44.19
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	44.34	43.85
CDX92166	Canola	plastid	40.26	42.97
CDX95817	Canola	plastid	40.07	42.94
AT3G17830.1	Thale cress	plastid	40.63	42.36
PGSC0003DMT400036786	Potato	plastid	41.56	42.11
Solyc03g118500.2.1	Tomato	plastid	41.56	42.11
EES13204	Sorghum	plastid	31.91	38.39
KXG31305	Sorghum	plastid	33.95	36.82
EER89093	Sorghum	mitochondrion, plastid	23.75	29.43
EES14600	Sorghum	cytosol	18.18	28.57
EES15725	Sorghum	mitochondrion, plastid	21.71	27.92
EES19943	Sorghum	cytosol	18.55	27.62
EES17644	Sorghum	cytosol	15.96	27.48
EES02163	Sorghum	cytosol	16.14	25.82
KXG32445	Sorghum	endoplasmic reticulum	16.33	25.43
KXG19604	Sorghum	mitochondrion	21.71	25.16
KXG37403	Sorghum	cytosol	19.48	25.12
OQU82085	Sorghum	nucleus	19.3	24.88
EES17752	Sorghum	endoplasmic reticulum, golgi	16.14	24.86
EES13688	Sorghum	cytosol	16.14	24.51
EES07516	Sorghum	nucleus	18.92	24.29
KXG29372	Sorghum	cytosol	14.84	23.67
EER93745	Sorghum	nucleus	18.0	23.15
EES01846	Sorghum	cytosol	13.17	21.58
EES19566	Sorghum	cytosol	11.5	18.24

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	UniProt:A0A1Z5SAN4	InterPro:DnaJ
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0031072	GO:GO:0046872
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	EnsemblPlants:OQU92981	ProteinID:OQU92981	ProteinID:OQU92981.1
PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PFscan:PS51188	PANTHER:PTHR43096	PANTHER:PTHR43096:SF26	SMART:SM00271	EnsemblPlantsGene:SORBI_3001G452000	SUPFAM:SSF46565
SUPFAM:SSF49493	SUPFAM:SSF57938	TMHMM:TMhelix	UniParc:UPI000B8B96DF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:72875060..72879969

Molecular Weight (calculated)

59614.1 Da

IEP (calculated)

9.674

GRAVY (calculated)

-0.494

Length

539 amino acids

Sequence
(BLAST)

001: MSATALFLPA NPNSTPSPAG TLRLRQPAPA STSGKLHFPL RLPRHARART YRPAAFGRGS PVAGRREKDH YATLNIRRDA TLQEIKAAYR ILARKYHPDM
101: NKSPEAEEKF KEISAAYEVL SDQDKRSLYD RFGEEGLSGD YRDGDIGTHG IDPYELFNAF FGGSDNLFGD SMGPGGFRYS AEAKGSRALN ISYNLLLSFE
201: ESILGGKREI NVFRHETCGT CHGTGAKCSN DITECTRCRG QGRLMKTQRT PFGIVSQISS CLNCEGSGKV ITEHCTECYG SGRVQVERII KVDIPGGIDE
301: GSTIRISGGG NVDKQRGASG DLYIFVRINE KQGIHRDGLN LYSDVSVDYT DVILGTTVKV ETIEGLKDLH IPPGTQPGEN LKFSQLGVPD IKKPNVRGDH
401: YFMIKVKIPK SISGHERLLV EELAALKKAQ NISVQETTKI ENFRERNHHP SAKRRSFLGS IWNLFRDDNG HQRFASISVQ PIIPGLNSGR GTDTAFPLLL
501: KGLLMTAAFL FLVSRTSKLR YIRKRVDRAT QAKIPAEPE

Best Arabidopsis Sequence Match ( AT3G17830.1 )
(BLAST)

001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET

Arabidopsis Description

At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.