CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009027_P001	Maize	cytosol	92.88	93.15
Os01t0239100-02	Rice	cytoskeleton, cytosol, nucleus	81.01	78.22
TraesCS3D01G168500.1	Wheat	cytosol	76.85	75.07
TraesCS3B01G192300.1	Wheat	cytosol	76.85	75.07
TraesCS3A01G161200.1	Wheat	nucleus	76.56	74.78
GSMUA_Achr8P16030_001	Banana	cytosol	72.7	74.02
Zm00001d039259_P001	Maize	nucleus	92.28	72.16
GSMUA_Achr2P19740_001	Banana	cytosol	65.88	68.94
EES19943	Sorghum	cytosol	72.11	67.13
GSMUA_Achr11P...	Banana	cytosol	69.44	62.57
HORVU3Hr1G032480.1	Barley	cytosol, nucleus	77.45	60.7
EES17644	Sorghum	cytosol	55.79	60.06
EES14600	Sorghum	cytosol	53.71	52.77
EES13688	Sorghum	cytosol	48.96	46.48
KXG29372	Sorghum	cytosol	45.4	45.27
EES01846	Sorghum	cytosol	32.64	33.43
EES17752	Sorghum	endoplasmic reticulum, golgi	34.12	32.86
EER93745	Sorghum	nucleus	37.09	29.83
KXG32445	Sorghum	endoplasmic reticulum	30.27	29.48
KXG37403	Sorghum	cytosol	36.5	29.43
OQU82085	Sorghum	nucleus	35.91	28.95
EES19566	Sorghum	cytosol	29.08	28.82
EES07516	Sorghum	nucleus	35.31	28.33
EES13204	Sorghum	plastid	31.16	23.44
KXG31305	Sorghum	plastid	31.45	21.33
EES15725	Sorghum	mitochondrion, plastid	25.82	20.76
EER89093	Sorghum	mitochondrion, plastid	25.52	19.77
KXG19604	Sorghum	mitochondrion	24.93	18.06
OQU92981	Sorghum	plastid	25.82	16.14

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.20.25.170	Gene3D:2.60.260.20	EntrezGene:8077545	UniProt:C5XJI2
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlants:EES02163	ProteinID:EES02163	ProteinID:EES02163.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226
PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF301
SMART:SM00271	EnsemblPlantsGene:SORBI_3003G002400	SUPFAM:SSF46565	SUPFAM:SSF49493	unigene:Sbi.13918	UniParc:UPI0001A84D21
RefSeq:XP_002457043.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:279640..284398

Molecular Weight (calculated)

37149.4 Da

IEP (calculated)

9.927

GRAVY (calculated)

-0.599

Length

337 amino acids

Sequence
(BLAST)

001: MGADYYKVLG VDRGAGDDDL KKAYRKLAMR WHPDKNSTNK KEAETKFKEI SVAYEVLSDP KKRAIYDQLG EEGLKGQPPP GAGGGPGSFP FFPGGAHSTA
101: HHFNPRSADD IFKEFFGFPG MGGMRAEPGF QRSMFGNDIF SSRFGSEGST SMQQPSRKPP AIENRLPVSL ADLYKGVTKK MKISRETIDA SGRISNAEDI
201: LTIEVKPGWK KGTKITFPDK GNEAPNMKPA DIVFIIDEKP HDVFTRDGND LVMTEKISLV EALTGYTARV TTLDGRSLSL PINSIIHPNY EEVVPREGMP
301: IPKDPTKKGN LRIKFNILFP SRLTSDQKAG IKRLLGS

Best Arabidopsis Sequence Match ( AT2G20560.1 )
(BLAST)

001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG

Arabidopsis Description

At2g20560/T13C7.15 [Source:UniProtKB/TrEMBL;Acc:Q9SIL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.