CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017476_P001	Maize	plasma membrane	96.67	96.21
Os02t0656500-01	Rice	nucleus	89.76	89.76
TraesCS6D01G232600.1	Wheat	nucleus	87.86	86.82
TraesCS6B01G274600.1	Wheat	nucleus	87.86	86.82
TraesCS6A01G250800.1	Wheat	nucleus	87.86	86.82
HORVU0Hr1G016360.1	Barley	cytosol	35.71	84.75
OQU82085	Sorghum	nucleus	82.38	82.78
GSMUA_Achr11P...	Banana	cytosol	73.33	80.84
GSMUA_Achr8P11020_001	Banana	nucleus	76.43	80.25
HORVU0Hr1G018300.1	Barley	plastid	89.52	77.69
KXG37403	Sorghum	cytosol	75.24	75.6
KRH66593	Soybean	endoplasmic reticulum	75.48	75.48
PGSC0003DMT400066980	Potato	nucleus	75.0	75.0
EER93745	Sorghum	nucleus	74.52	74.7
KRH48754	Soybean	endoplasmic reticulum	74.29	74.29
Solyc01g090550.2.1	Tomato	nucleus	74.52	73.82
PGSC0003DMT400018083	Potato	nucleus	72.38	72.55
VIT_15s0021g02090.t01	Wine grape	cytosol	76.43	72.46
Solyc05g050820.2.1	Tomato	cytosol	35.95	63.45
Solyc05g050810.2.1	Tomato	nucleus	31.43	51.36
EES02163	Sorghum	cytosol	28.33	35.31
EES17644	Sorghum	cytosol	26.19	35.14
EES17752	Sorghum	endoplasmic reticulum, golgi	29.05	34.86
EES14600	Sorghum	cytosol	28.1	34.4
EES19943	Sorghum	cytosol	29.29	33.98
KXG32445	Sorghum	endoplasmic reticulum	27.38	33.24
KXG29372	Sorghum	cytosol	25.24	31.36
EES13688	Sorghum	cytosol	25.48	30.14
EES01846	Sorghum	cytosol	19.76	25.23
EES13204	Sorghum	plastid	26.67	25.0
EER89093	Sorghum	mitochondrion, plastid	25.48	24.6
EES19566	Sorghum	cytosol	19.76	24.41
KXG31305	Sorghum	plastid	27.62	23.34
EES15725	Sorghum	mitochondrion, plastid	22.86	22.91
KXG19604	Sorghum	mitochondrion	23.33	21.08
OQU92981	Sorghum	plastid	24.29	18.92

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	EntrezGene:8073959	UniProt:C5XRY7
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlants:EES07516	ProteinID:EES07516
ProteinID:EES07516.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987
GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43888	PANTHER:PTHR43888:SF1	SMART:SM00271	EnsemblPlantsGene:SORBI_3004G295800	SUPFAM:SSF46565	SUPFAM:SSF49493
SUPFAM:SSF57938	unigene:Sbi.3680	UniParc:UPI0001A8606B	RefSeq:XP_002454540.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:63558304..63565377

Molecular Weight (calculated)

46788.5 Da

IEP (calculated)

7.480

GRAVY (calculated)

-0.794

Length

420 amino acids

Sequence
(BLAST)

001: MFGRMPRKSS NNTKYYEVLG VSKTASQDEL KKAYRKAAIK NHPDKGGDPE KFKELSQAYD VLSDPEKREI YDQYGEDALK EGMGGGGSSD FHSPFDIFEQ
101: LFPGSSGFGG GSRGRRQKRG EDVVHTMKVS LEDLYNGTTK KLSLSRSALC SKCKGKGSKS GASGTCHGCR GAGMRTITRQ IGPGMIQQMN TVCPECKGSG
201: EIISDKDKCP SCKGSKVVQE KKVLEVHVEK GMQHSQKIVF QGQADEAPDT VTGDIVFVLQ LKDHPKFKRK YDDLYVEHTI SLTEALCGFQ FVLTHLDGRQ
301: LLIKSNPGEV IKPGQHKAIN DEGMPQHGRP FMKGRLFVEF NVEFPEPGVL STAQCRSLEK ILPPKPGSQL SDMELDQCEE TTLHDVNIEE EMRRRQQQRR
401: QEAYDEDEEE AGPRVQCAQQ

Best Arabidopsis Sequence Match ( AT3G44110.1 )
(BLAST)

001: MFGRGPSKKS DNTKFYEILG VPKSASPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GGGPFGGNTS RQRRQRRGED VVHPLKVSLE DVYLGTMKKL SLSRNALCSK CNGKGSKSGA SLKCGGCQGS GMKVSIRQLG PGMIQQMQHA CNECKGTGET
201: INDRDRCPQC KGDKVIPEKK VLEVNVEKGM QHSQKITFEG QADEAPDTVT GDIVFVLQQK EHPKFKRKGE DLFVEHTLSL TEALCGFQFV LTHLDGRSLL
301: IKSNPGEVVK PDSYKAISDE GMPIYQRPFM KGKLYIHFTV EFPDSLSPDQ TKALEAVLPK PSTAQLSDME IDECEETTLH DVNIEDEMRR KAQAQREAYD
401: DDDEDDDHPG GAQRVQCAQQ

Arabidopsis Description

ATJ3DnaJ protein homolog atj3 [Source:UniProtKB/TrEMBL;Acc:Q0WW92]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.