CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033210_P002	Maize	nucleus	98.81	98.81
Os03t0648400-02	Rice	nucleus	95.7	96.16
Zm00001d013669_P002	Maize	cytosol	98.09	91.54
GSMUA_Achr4P31390_001	Banana	cytosol	88.78	89.42
GSMUA_Achr9P25940_001	Banana	nucleus	88.54	88.97
VIT_06s0080g01230.t01	Wine grape	cytosol	88.54	88.97
VIT_13s0073g00560.t01	Wine grape	cytosol	88.07	88.7
GSMUA_Achr6P29960_001	Banana	nucleus	87.11	88.16
GSMUA_Achr4P22790_001	Banana	cytosol	87.83	88.04
KRH25334	Soybean	nucleus	87.35	87.77
KRG88903	Soybean	nucleus	86.87	87.29
KXG37403	Sorghum	cytosol	86.4	86.6
GSMUA_Achr7P01290_001	Banana	nucleus	84.73	85.13
KRH22611	Soybean	nucleus	83.77	84.17
KRH26709	Soybean	nucleus	83.53	83.93
AT3G44110.1	Thale cress	nucleus	83.53	83.33
CDY09117	Canola	nucleus	83.05	82.27
Bra020169.1-P	Field mustard	nucleus	82.58	81.8
CDX92386	Canola	nucleus	82.34	81.75
Bra002385.1-P	Field mustard	nucleus	82.34	81.75
CDX92385	Canola	nucleus	82.1	81.52
Bra002386.1-P	Field mustard	nucleus	81.86	81.28
CDY65546	Canola	nucleus	81.38	81.0
AT5G22060.1	Thale cress	cytosol	80.43	80.43
Bra006608.1-P	Field mustard	nucleus	75.42	77.45
CDX88812	Canola	nucleus	75.42	77.45
CDX70980	Canola	nucleus	73.99	76.17
CDY16617	Canola	nucleus	37.47	75.48
EES07516	Sorghum	nucleus	74.7	74.52
OQU82085	Sorghum	nucleus	71.12	71.29
EES17752	Sorghum	endoplasmic reticulum, golgi	32.94	39.43
EES02163	Sorghum	cytosol	29.83	37.09
EES17644	Sorghum	cytosol	26.73	35.78
KXG32445	Sorghum	endoplasmic reticulum	29.36	35.55
EES19943	Sorghum	cytosol	30.31	35.08
EES14600	Sorghum	cytosol	28.64	34.99
KXG29372	Sorghum	cytosol	26.97	33.43
EES13688	Sorghum	cytosol	27.45	32.39
EES01846	Sorghum	cytosol	19.81	25.23
EER89093	Sorghum	mitochondrion, plastid	25.78	24.83
EES13204	Sorghum	plastid	26.49	24.78
EES19566	Sorghum	cytosol	19.81	24.41
KXG31305	Sorghum	plastid	28.4	23.94
EES15725	Sorghum	mitochondrion, plastid	22.43	22.43
KXG19604	Sorghum	mitochondrion	24.11	21.72
OQU92981	Sorghum	plastid	23.15	18.0

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	EntrezGene:8062202	UniProt:C5WR54
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlants:EER93745	ProteinID:EER93745
ProteinID:EER93745.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987
GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	SMART:SM00271	EnsemblPlantsGene:SORBI_3001G154100	SUPFAM:SSF46565	SUPFAM:SSF49493
SUPFAM:SSF57938	unigene:Sbi.14215	UniParc:UPI0001A82B0B	RefSeq:XP_002466747.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:12370479..12374638

Molecular Weight (calculated)

46656.3 Da

IEP (calculated)

6.583

GRAVY (calculated)

-0.784

Length

419 amino acids

Sequence
(BLAST)

001: MFGRAPKKSD NTKYYEILGV PKSASQDDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGGGAHVD PFDIFSSFFG
101: PSFGGGGGSS RGRRQRRGED VVHPLKVSLE DLYNGTSKKL SLSRNVICSK CKGKGSKSGA SMRCPGCQGS GMKVTIRQLG PSMIQQMQQP CNECKGTGES
201: INEKDRCPGC KGEKVVQEKK VLEVHVEKGM QHNQKITFPG EADEAPDTVT GDIVFVLQQK DHSKFKRKGE DLFYEHTLSL TEALCGFQFV LTHLDNRQLL
301: IKSNPGEVVK PDQFKAINDE GMPIYQRPFM KGKLYIHFTV EFPDSLAPEQ CKALEAVLPP RSSSKLTDME IDECEETTMH DVNNIEEEMR RKQAHAAQEA
401: YEEDDEMPGG AQRVQCAQQ

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.