Factsheet for VIT_13s0073g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44110.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g01230.t01	Wine grape	cytosol	92.31	92.09
GSMUA_Achr4P31390_001	Banana	cytosol	90.87	90.87
Solyc05g055160.2.1	Tomato	nucleus	90.87	90.21
PGSC0003DMT400060145	Potato	cytosol	90.62	89.98
Solyc11g006460.1.1	Tomato	nucleus	90.38	89.74
PGSC0003DMT400005019	Potato	cytosol	90.38	89.74
GSMUA_Achr4P22790_001	Banana	cytosol	90.14	89.71
GSMUA_Achr6P29960_001	Banana	nucleus	88.7	89.13
GSMUA_Achr9P25940_001	Banana	nucleus	88.94	88.73
EER93745	Sorghum	nucleus	88.7	88.07
Os03t0787300-01	Rice	plasma membrane	87.98	87.77
Zm00001d033210_P002	Maize	nucleus	88.22	87.59
KXG37403	Sorghum	cytosol	87.98	87.56
Os03t0648400-02	Rice	nucleus	87.02	86.81
Solyc04g009770.2.1	Tomato	nucleus	87.02	86.6
Zm00001d034368_P001	Maize	extracellular, plasma membrane	86.78	86.36
GSMUA_Achr7P01290_001	Banana	nucleus	86.06	85.85
PGSC0003DMT400065401	Potato	nucleus	86.3	85.68
Zm00001d013111_P001	Maize	extracellular, plasma membrane	85.58	85.37
TraesCS5A01G426100.1	Wheat	nucleus	85.34	84.32
TraesCS5D01G434100.1	Wheat	nucleus	85.1	84.09
TraesCS5B01G428000.1	Wheat	nucleus	85.1	84.09
HORVU5Hr1G103680.1	Barley	cytosol	84.62	83.61
AT3G44110.1	Thale cress	nucleus	84.38	83.57
PGSC0003DMT400007728	Potato	nucleus	83.41	82.82
CDX92386	Canola	nucleus	83.89	82.7
Bra002385.1-P	Field mustard	nucleus	83.89	82.7
CDX92385	Canola	nucleus	83.65	82.46
Bra002386.1-P	Field mustard	nucleus	83.41	82.23
Solyc11g071830.1.1	Tomato	plastid	82.45	82.06
CDY65546	Canola	nucleus	82.93	81.95
CDY09117	Canola	nucleus	83.17	81.8
Bra020169.1-P	Field mustard	nucleus	82.93	81.56
Zm00001d013669_P002	Maize	cytosol	87.74	81.29
AT5G22060.1	Thale cress	cytosol	81.49	80.91
Zm00001d006666_P001	Maize	nucleus	55.05	78.16
Bra006608.1-P	Field mustard	nucleus	75.96	77.45
CDX88812	Canola	nucleus	75.96	77.45
Zm00001d048538_P001	Maize	nucleus	60.1	76.92
CDX70980	Canola	nucleus	74.52	76.17
Zm00001d031357_P001	Maize	cytosol, nucleus, plastid	33.17	75.0
CDY16617	Canola	nucleus	37.02	74.04
Zm00001d006230_P001	Maize	cytosol	50.96	73.1
Zm00001d045645_P001	Maize	cytosol	46.39	72.56
VIT_15s0021g02090.t01	Wine grape	cytosol	76.92	72.23
Zm00001d006563_P001	Maize	mitochondrion	45.91	70.22
HORVU6Hr1G065410.3	Barley	cytosol, mitochondrion	48.8	69.52
Zm00001d026185_P001	Maize	endoplasmic reticulum	78.12	64.61
Zm00001d004840_P001	Maize	mitochondrion	52.4	63.56
VIT_01s0026g01450.t01	Wine grape	cytosol	25.48	38.83
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	31.73	38.26
VIT_10s0003g00260.t01	Wine grape	cytosol	30.53	37.13
VIT_04s0008g04300.t01	Wine grape	cytosol	29.81	36.58
VIT_08s0105g00350.t01	Wine grape	cytosol	29.09	35.8
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	29.09	34.67
VIT_13s0064g01360.t01	Wine grape	mitochondrion	27.4	25.28
VIT_00s0324g00040.t01	Wine grape	plastid	27.88	24.12
VIT_09s0002g07210.t01	Wine grape	plastid	27.16	23.11
VIT_18s0001g06970.t01	Wine grape	endoplasmic reticulum, extracellular	18.99	22.77
VIT_17s0000g02030.t01	Wine grape	plastid	26.2	22.66
VIT_12s0034g02190.t01	Wine grape	nucleus	15.14	18.37

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100233131	wikigene:100233131	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20
ProteinID:CBI24994	ProteinID:CBI24994.3	ncoils:Coil	UniProt:D7T3A9	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EMBL:FN595510	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd
InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
EntrezGene:LOC100233131	wikigene:LOC100233131	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF4
SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TIGR:TC51853	TIGR:TC67658
UniParc:UPI00015CC77A	ArrayExpress:VIT_13s0073g00560	EnsemblPlantsGene:VIT_13s0073g00560	EnsemblPlants:VIT_13s0073g00560.t01	unigene:Vvi.8056	RefSeq:XP_002263156
RefSeq:XP_002263156.1	RefSeq:XP_010658892.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:14441307..14444078

Molecular Weight (calculated)

46242.8 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.765

Length

416 amino acids

Sequence
(BLAST)

001: MFGRAPKKSD NTKYYDVLGV SKNASQEDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGGGGGHD PFDIFQSFFG
101: GNPFGGGGSS RGRRQRRGED VIHPLKVSLE DLYNGTSKKL SLSRNVICSK CKGKGSKSGA SMKCSGCQGS GMKVSIRHLG PSMIQQMQHP CNECKGTGET
201: INDKDRCPQC KGEKVVQEKK VLEVIVEKGM QNGQRITFPG EADEAPDTVT GDIVFVLQQK EHPKFKRKGD DLFVEHTLSL TEALCGFQFI LTHLDGRQLL
301: IKSHPGEVVK PDQFKAINDE GMPIYQKPFM KGKLYIHFAV DFPDSLNTDQ CKALEAVLPP RTSTQLTDME IDECEETTLH DVNIEEEMRR KQAAQEAYEE
401: DEDIHGGAQR VQCAQQ

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.