Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
- golgi 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH00241 | Soybean | cytosol, nucleus | 85.21 | 84.96 |
| Solyc09g005350.2.1 | Tomato | nucleus, plastid | 84.02 | 83.53 |
| PGSC0003DMT400059397 | Potato | cytosol | 83.73 | 83.24 |
| KRH49388 | Soybean | cytosol | 84.02 | 82.08 |
| CDY68815 | Canola | cytoskeleton, cytosol, nucleus | 80.77 | 81.74 |
| AT3G08910.1 | Thale cress | nucleus | 78.11 | 81.73 |
| Bra029729.1-P | Field mustard | nucleus | 79.29 | 81.71 |
| CDY64940 | Canola | nucleus | 79.29 | 81.71 |
| Bra001337.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 80.47 | 81.44 |
| CDY07893 | Canola | cytosol | 76.92 | 80.5 |
| CDY58657 | Canola | cytosol | 77.51 | 80.37 |
| CDY22173 | Canola | cytosol | 79.88 | 80.36 |
| CDY27963 | Canola | cytosol | 77.51 | 79.64 |
| Bra040063.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 76.04 | 78.83 |
| AT5G01390.1 | Thale cress | cytosol | 74.56 | 75.22 |
| VIT_10s0003g00260.t01 | Wine grape | cytosol | 76.04 | 75.15 |
| EES17644 | Sorghum | cytosol | 62.13 | 67.09 |
| Zm00001d010958_P001 | Maize | cytosol | 63.02 | 65.34 |
| TraesCS1A01G070300.1 | Wheat | cytosol | 59.76 | 59.59 |
| VIT_04s0008g04300.t01 | Wine grape | cytosol | 59.17 | 59.0 |
| VIT_17s0000g05530.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 60.65 | 58.74 |
| TraesCS1B01G088700.1 | Wheat | cytosol | 60.06 | 58.5 |
| TraesCS1D01G072800.1 | Wheat | nucleus | 59.47 | 58.43 |
| VIT_01s0026g01450.t01 | Wine grape | cytosol | 45.27 | 56.04 |
| GSMUA_Achr6P15600_001 | Banana | cytosol | 70.41 | 53.85 |
| HORVU1Hr1G015040.2 | Barley | plastid | 60.65 | 53.52 |
| HORVU1Hr1G015060.2 | Barley | plastid | 33.43 | 39.65 |
| VIT_07s0005g01220.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 35.5 | 34.78 |
| VIT_06s0080g01230.t01 | Wine grape | cytosol | 36.98 | 29.98 |
| VIT_13s0073g00560.t01 | Wine grape | cytosol | 35.8 | 29.09 |
| VIT_15s0021g02090.t01 | Wine grape | cytosol | 36.09 | 27.54 |
| VIT_12s0034g02190.t01 | Wine grape | nucleus | 27.22 | 26.82 |
| VIT_00s0324g00040.t01 | Wine grape | plastid | 30.18 | 21.21 |
| VIT_09s0002g07210.t01 | Wine grape | plastid | 30.18 | 20.86 |
| VIT_13s0064g01360.t01 | Wine grape | mitochondrion | 26.04 | 19.51 |
| VIT_18s0001g06970.t01 | Wine grape | endoplasmic reticulum, extracellular | 19.23 | 18.73 |
| VIT_17s0000g02030.t01 | Wine grape | plastid | 26.63 | 18.71 |
Protein Annotations
| Gene3D:1.10.287.110 | EntrezGene:100253930 | wikigene:100253930 | MapMan:19.1.5.2 | Gene3D:2.60.260.20 | ProteinID:CCB47918 |
| ProteinID:CCB47918.1 | InterPro:DnaJ_C | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS | UniProt:F6H6T2 | EMBL:FN595245 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | EntrezGene:LOC100253930 |
| wikigene:LOC100253930 | PFAM:PF00226 | PFAM:PF01556 | PRINTS:PR00625 | ScanProsite:PS00636 | PFscan:PS50076 |
| PANTHER:PTHR24078 | PANTHER:PTHR24078:SF298 | SMART:SM00271 | SUPFAM:SSF46565 | SUPFAM:SSF49493 | TIGR:TC63613 |
| UniParc:UPI00015CBD1E | ArrayExpress:VIT_08s0105g00350 | EnsemblPlantsGene:VIT_08s0105g00350 | EnsemblPlants:VIT_08s0105g00350.t01 | unigene:Vvi.18233 | RefSeq:XP_002265325 |
| RefSeq:XP_002265325.1 | RefSeq:XP_003632577 | RefSeq:XP_003632577.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr8:+:7542314..7557322
Molecular Weight (calculated)
37360.6 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.576
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVDYYKILQ VDRSAKDDDL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYDVLSDP QKRAVYDQYG EEGLKGQVPP PGAGGFSGGS DGGPTMFRFN
101: PRSADDIFSE FFGFSSPFGD MGGSRAGGSG FPRGMFSEDF FSSFRGGAGE ASSATMPRKG APIERALPCS LDDLYKGTSK KMKISRDVID HFGRTTTTEE
201: ILTIEIKPGW KKGTKITFPE KGNEQRGIVP SDLIFIIDEK PHLVFKRDGN DLIFTQKISL VEALTGYTVQ VTTLDGRTLT IPINSIISPT YEEVVKGEGM
301: PIPKEPSKKG NLRIKFNIKF PARLTSEQKT GIKRLLSS
101: PRSADDIFSE FFGFSSPFGD MGGSRAGGSG FPRGMFSEDF FSSFRGGAGE ASSATMPRKG APIERALPCS LDDLYKGTSK KMKISRDVID HFGRTTTTEE
201: ILTIEIKPGW KKGTKITFPE KGNEQRGIVP SDLIFIIDEK PHLVFKRDGN DLIFTQKISL VEALTGYTVQ VTTLDGRTLT IPINSIISPT YEEVVKGEGM
301: PIPKEPSKKG NLRIKFNIKF PARLTSEQKT GIKRLLSS
001: MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KDAEAKFKQI SEAYDVLSDP QKRAIYDQYG EEGLTSQAPP PGAGGGFSDG GASFRFNGRS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS
Arabidopsis Description
At3g08910 [Source:UniProtKB/TrEMBL;Acc:Q9SR91]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.