Factsheet for VIT_13s0064g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27511	Soybean	mitochondrion	68.74	69.98
GSMUA_Achr4P11580_001	Banana	mitochondrion	69.18	69.03
KRH36456	Soybean	mitochondrion	67.41	68.62
Solyc01g086740.2.1	Tomato	mitochondrion	67.18	68.4
PGSC0003DMT400064990	Potato	mitochondrion	67.18	68.4
KRH13903	Soybean	mitochondrion	67.18	68.24
KRH43470	Soybean	mitochondrion	66.52	67.57
TraesCS7D01G045900.2	Wheat	mitochondrion	58.76	66.42
GSMUA_Achr3P00410_001	Banana	mitochondrion	66.08	66.22
Zm00001d035975_P001	Maize	mitochondrion	62.53	65.73
Zm00001d035974_P001	Maize	mitochondrion	62.08	65.27
EER89093	Sorghum	mitochondrion, plastid	62.53	64.83
CDY54516	Canola	mitochondrion	63.19	62.91
AT5G48030.1	Thale cress	mitochondrion	63.41	62.72
Bra020721.1-P	Field mustard	mitochondrion	61.86	62.42
CDY45921	Canola	mitochondrion	61.86	62.42
CDY35761	Canola	mitochondrion	61.86	62.42
TraesCS7A01G051000.1	Wheat	mitochondrion	60.75	62.41
Bra037514.1-P	Field mustard	mitochondrion	62.08	61.95
Os06t0116800-01	Rice	mitochondrion	60.53	61.76
CDX86330	Canola	mitochondrion	62.08	61.4
HORVU7Hr1G009230.8	Barley	plastid	59.2	60.0
Os12t0168400-01	Rice	plastid	53.22	57.28
EES15725	Sorghum	mitochondrion, plastid	53.22	57.28
TraesCS5A01G117600.1	Wheat	plastid	52.11	55.82
HORVU5Hr1G036400.3	Barley	plastid	52.77	55.74
TraesCS5D01G129700.1	Wheat	mitochondrion, plastid	51.88	55.58
TraesCS5B01G117900.1	Wheat	mitochondrion, plastid	51.88	55.58
GSMUA_Achr4P12400_001	Banana	mitochondrion	57.43	55.34
Zm00001d023537_P002	Maize	mitochondrion	51.66	54.82
VIT_18s0001g06970.t01	Wine grape	endoplasmic reticulum, extracellular	26.61	34.58
VIT_00s0324g00040.t01	Wine grape	plastid	34.59	32.43
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	23.95	31.3
VIT_01s0026g01450.t01	Wine grape	cytosol	17.52	28.94
VIT_13s0073g00560.t01	Wine grape	cytosol	25.28	27.4
VIT_06s0080g01230.t01	Wine grape	cytosol	25.28	27.34
VIT_09s0002g07210.t01	Wine grape	plastid	29.27	26.99
VIT_17s0000g02030.t01	Wine grape	plastid	28.16	26.4
VIT_08s0105g00350.t01	Wine grape	cytosol	19.51	26.04
VIT_10s0003g00260.t01	Wine grape	cytosol	19.29	25.44
VIT_04s0008g04300.t01	Wine grape	cytosol	19.07	25.37
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	19.29	24.93
VIT_15s0021g02090.t01	Wine grape	cytosol	23.95	24.38
VIT_12s0034g02190.t01	Wine grape	nucleus	9.76	12.83

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100259686	wikigene:100259686	MapMan:19.1.3.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20
ProteinID:CBI24850	ProteinID:CBI24850.3	UniProt:D7T2W9	InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	EMBL:FN595509	GO:GO:0000003	GO:GO:0000166	GO:GO:0000740	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006457	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008219	GO:GO:0009408	GO:GO:0009553	GO:GO:0009558	GO:GO:0009628	GO:GO:0009653
GO:GO:0009856	GO:GO:0009987	GO:GO:0010197	GO:GO:0010198	GO:GO:0016043	GO:GO:0030154
GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	GO:GO:0051085	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100259686
wikigene:LOC100259686	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096	PANTHER:PTHR43096:SF25	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TIGR:TC57818	TIGRFAMs:TIGR02349	UniParc:UPI0001BE28D3
ArrayExpress:VIT_13s0064g01360	EnsemblPlantsGene:VIT_13s0064g01360	EnsemblPlants:VIT_13s0064g01360.t01	unigene:Vvi.13855	RefSeq:XP_002263448	RefSeq:XP_002263448.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:23242305..23254584

Molecular Weight (calculated)

49122.2 Da

IEP (calculated)

8.862

GRAVY (calculated)

-0.492

Length

451 amino acids

Sequence
(BLAST)

001: MVRTNGAKLF RCLARKSLQS SLLEASPTSI NESLLRGHYR CFGSGICNNS SRVIGIPNST SVNHRNRLLF GVLNANWGAA RWIHGTAYMA ANDYYDTLGV
101: SKNASASEIK KAYYGLAKKF HPDTNKEDPD AEKKFQEVQK AYEVLKDEEK RSLYDQVGHD AFEQANTEGG AGNPFHGGGF GNPFEDIFQN DFFKTIFKQN
201: IGGQDVKVSI ELSFMEAVQG CTKTVTFQTA LPCEACGGSG VPPGTKPETC KRCRGSGMMF MQNGPFRLQS TCTHCGGTGK TVSTFCKSCK GDRVVRGSKS
301: VKLDIMPGVD DNETLKVYRS GGADPEGNQP GDLYVTIRVR QDPVFRREGP DIHVDAVLSI TQAILGGTIQ VPTLTGDVVL KVRPGTQPGQ KVVLKRKGVK
401: GRNSLSFGDQ YVHFNVSIPS NLTQRQRQLI EEFAKEEQGE YDKGAAAGAS G

Best Arabidopsis Sequence Match ( AT5G48030.1 )
(BLAST)

001: MVPSNGAKVL RLLSRRCLSS SLIQDLANQK LRGVCIGSYR RLNTSVGNHA NVIGDYASKS GHDRKWINFG GFNTNFGSTR SFHGTGSSFM SAKDYYSVLG
101: VSKNAQEGEI KKAYYGLAKK LHPDMNKDDP EAETKFQEVS KAYEILKDKE KRDLYDQVGH EAFEQNASGG FPNDQGFGGG GGGGFNPFDI FGSFNGDIFN
201: MYRQDIGGQD VKVLLDLSFM EAVQGCSKTV TFQTEMACNT CGGQGVPPGT KREKCKACNG SGMTSLRRGM LSIQTTCQKC GGAGQTFSSI CKSCRGARVV
301: RGQKSVKVTI DPGVDNSDTL KVARVGGADP EGDQPGDLYV TLKVREDPVF RREGSDIHVD AVLSVTQAIL GGTIQVPTLT GDVVVKVRPG TQPGHKVVLR
401: NKGIRARKST KFGDQYVHFN VSIPANITQR QRELLEEFSK AEQGEYEQRT ATGSSQ

Arabidopsis Description

GFA2GFA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UJR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.