CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45921	Canola	mitochondrion	99.55	99.55
CDY54516	Canola	mitochondrion	87.25	86.09
CDX86330	Canola	mitochondrion	87.02	85.31
AT5G48030.1	Thale cress	mitochondrion	86.13	84.43
VIT_13s0064g01360.t01	Wine grape	mitochondrion	62.42	61.86
PGSC0003DMT400064990	Potato	mitochondrion	61.3	61.85
Solyc01g086740.2.1	Tomato	mitochondrion	61.3	61.85
TraesCS7D01G045900.2	Wheat	mitochondrion	52.8	59.15
KRH13903	Soybean	mitochondrion	58.61	59.01
KRH27511	Soybean	mitochondrion	58.17	58.69
GSMUA_Achr4P11580_001	Banana	mitochondrion	59.28	58.63
Zm00001d035975_P001	Maize	mitochondrion	55.7	58.04
KRH36456	Soybean	mitochondrion	57.49	58.01
KRH43470	Soybean	mitochondrion	57.49	57.88
Zm00001d035974_P001	Maize	mitochondrion	55.48	57.81
EER89093	Sorghum	mitochondrion, plastid	56.15	57.7
GSMUA_Achr3P00410_001	Banana	mitochondrion	57.05	56.67
TraesCS7A01G051000.1	Wheat	mitochondrion	55.48	56.49
HORVU7Hr1G009230.8	Barley	plastid	54.59	54.83
Os06t0116800-01	Rice	mitochondrion	54.14	54.75
EES15725	Sorghum	mitochondrion, plastid	49.44	52.74
Os12t0168400-01	Rice	plastid	48.55	51.79
Zm00001d023537_P002	Maize	mitochondrion	48.55	51.06
TraesCS5A01G117600.1	Wheat	plastid	47.87	50.83
TraesCS5B01G117900.1	Wheat	mitochondrion, plastid	47.87	50.83
TraesCS5D01G129700.1	Wheat	mitochondrion, plastid	47.87	50.83
HORVU5Hr1G036400.3	Barley	plastid	47.87	50.12
GSMUA_Achr4P12400_001	Banana	mitochondrion	51.9	49.57
CDX90134	Canola	mitochondrion	32.21	33.49
CDX89453	Canola	plastid	32.66	32.3
CDY25588	Canola	plastid	32.66	32.16
CDY37986	Canola	cytosol	15.66	29.66
CDY20944	Canola	cytosol	19.91	29.18
CDY63891	Canola	cytosol	31.54	29.01
CDY35719	Canola	mitochondrion	31.99	28.77
CDY27963	Canola	cytosol	20.81	28.27
CDX97443	Canola	cytosol	19.02	28.24
CDX76646	Canola	golgi	21.7	28.03
CDY11430	Canola	golgi	21.7	28.03
CDY58774	Canola	plastid	31.32	28.0
CDX69371	Canola	mitochondrion	31.32	27.94
CDX67894	Canola	endoplasmic reticulum, golgi	20.36	27.83
CDX87288	Canola	plastid	31.1	27.74
CDY64940	Canola	nucleus	20.36	27.74
CDY63310	Canola	endoplasmic reticulum	21.25	27.38
CDX92876	Canola	cytoskeleton, cytosol, nucleus	19.46	27.36
CDY58657	Canola	cytosol	19.91	27.3
CDY20637	Canola	cytosol	19.46	27.19
CDY35188	Canola	cytosol	19.69	27.16
CDX88188	Canola	cytosol	19.46	27.1
CDX80523	Canola	cytosol	19.46	27.1
CDY59898	Canola	endoplasmic reticulum, golgi	21.03	27.09
CDY68815	Canola	cytoskeleton, cytosol, nucleus	20.13	26.95
CDY07893	Canola	cytosol	19.46	26.93
CDY13869	Canola	cytosol	20.36	26.92
CDX89142	Canola	endoplasmic reticulum	20.81	26.8
CDX83026	Canola	cytosol	19.46	26.52
CDY65077	Canola	cytosol	19.91	26.49
CDY29908	Canola	cytoskeleton, cytosol, nucleus	19.02	26.48
CDY22173	Canola	cytosol	19.69	26.19
CDY54902	Canola	cytosol	19.46	26.13
CDY05498	Canola	cytosol	19.46	26.13
CDY38388	Canola	cytosol	19.91	26.02
CDY45143	Canola	cytoskeleton, cytosol, nucleus	19.24	25.98
CDY36915	Canola	cytosol	19.02	25.45
CDY30900	Canola	cytoskeleton, cytosol, nucleus	19.02	25.22
CDY65546	Canola	nucleus	23.71	25.18
CDX92385	Canola	nucleus	23.71	25.12
CDX68447	Canola	cytosol	19.24	25.07
CDX92386	Canola	nucleus	23.49	24.88
CDX88812	Canola	nucleus	22.6	24.75
CDX70980	Canola	nucleus	22.37	24.57
CDX92166	Canola	plastid	27.52	24.36
CDY09117	Canola	nucleus	23.04	24.35
CDX95817	Canola	plastid	27.07	24.06
CDY21803	Canola	nucleus	17.67	23.37
CDY24146	Canola	cytosol	19.24	22.81
CDY16617	Canola	nucleus	7.16	15.38
CDY14974	Canola	nucleus	11.41	14.74
CDY66166	Canola	plastid	11.41	14.66
CDY20589	Canola	nucleus	11.19	12.72
CDY20977	Canola	nucleus	11.41	12.66
CDX97927	Canola	nucleus	11.86	12.24
CDY67277	Canola	cytosol, nucleus, plastid	11.86	12.18

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.3.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	GO:A0A078HDH2	UniProt:A0A078HDH2
EnsemblPlants:CDY35761	ProteinID:CDY35761	ProteinID:CDY35761.1	InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987
GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00059209001	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152
PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PFscan:PS51188	PANTHER:PTHR43096	PANTHER:PTHR43096:SF25	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493
SUPFAM:SSF57938	UniParc:UPI0004EC86C3	SEG:seg	:	:	:

Description

BnaC02g38330DBnaC02g38330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDH2]

Coordinates

chrLK032360:+:18479..21899

Molecular Weight (calculated)

48870.9 Da

IEP (calculated)

9.512

GRAVY (calculated)

-0.576

Length

447 amino acids

Sequence
(BLAST)

001: MIPTNGARVL RLLTRRCLSS PLVQDLTNQR LRGVAIGSFR RLNTGTTNPA KFLGDYASKS GDGRKWINFG GFNSSFGSTR SIHGTGSSFM SAKDYYEVLG
101: VSKNAPEGEI KKAYYGLAKK LHPDMNKDDP EAEKKFQEVS KAYEILKDKE KRDLYDQVGH EAFEQNASGG GYPNDGGFGE GFNPFDIFDI FSRNKQEFGG
201: QDVKVLLELS FMEAVQGCSK TVTFQTELAC NTCGGQGVPP GTKRERCKAC NGSGMTTMRR GMLSIQRTCD KCGGAGQTFS SICKSCRGGR VVRGQKTVKV
301: NIDPGVDNTD TLKVSKSGGA DPDGDQPGDL YVIFKVREDP VFRREGSDIH VNSVISVTQA ILGGTIQVPT LTGDVVVKVR PGTQPGQKVV LRNKGIRARK
401: STKFGDQYVH FNVSIPANIT QRQRELLEEF IKEEQGDYEK RTASASS

Best Arabidopsis Sequence Match ( AT5G48030.1 )
(BLAST)

001: MVPSNGAKVL RLLSRRCLSS SLIQDLANQK LRGVCIGSYR RLNTSVGNHA NVIGDYASKS GHDRKWINFG GFNTNFGSTR SFHGTGSSFM SAKDYYSVLG
101: VSKNAQEGEI KKAYYGLAKK LHPDMNKDDP EAETKFQEVS KAYEILKDKE KRDLYDQVGH EAFEQNASGG FPNDQGFGGG GGGGFNPFDI FGSFNGDIFN
201: MYRQDIGGQD VKVLLDLSFM EAVQGCSKTV TFQTEMACNT CGGQGVPPGT KREKCKACNG SGMTSLRRGM LSIQTTCQKC GGAGQTFSSI CKSCRGARVV
301: RGQKSVKVTI DPGVDNSDTL KVARVGGADP EGDQPGDLYV TLKVREDPVF RREGSDIHVD AVLSVTQAIL GGTIQVPTLT GDVVVKVRPG TQPGHKVVLR
401: NKGIRARKST KFGDQYVHFN VSIPANITQR QRELLEEFSK AEQGEYEQRT ATGSSQ

Arabidopsis Description

GFA2GFA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UJR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.