CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G39960.1	Thale cress	mitochondrion, plastid	84.83	95.08
CDY63891	Canola	cytosol	91.22	94.03
Bra011820.1-P	Field mustard	cytosol	91.02	86.2
CDY25588	Canola	plastid	74.65	82.38
CDX89453	Canola	plastid	74.05	82.08
Solyc01g105340.2.1	Tomato	plastid	53.69	76.2
KRH59311	Soybean	plastid	64.27	74.36
KRH43163	Soybean	plastid	64.07	73.46
KRH31310	Soybean	nucleus, plastid	63.87	72.73
KRG97564	Soybean	plastid	62.67	71.36
VIT_00s0324g00040.t01	Wine grape	plastid	68.06	70.89
PGSC0003DMT400032760	Potato	plastid	61.48	69.21
TraesCS5A01G115000.1	Wheat	plastid	56.89	68.67
Os05t0333500-01	Rice	mitochondrion, plastid	59.88	67.11
Os05t0334000-01	Rice	mitochondrion, plastid	59.88	67.11
Os05t0334400-01	Rice	mitochondrion, plastid	59.88	67.11
EES13204	Sorghum	plastid	59.88	66.96
GSMUA_Achr1P15780_001	Banana	plastid	59.28	66.74
GSMUA_Achr3P00920_001	Banana	mitochondrion	60.08	66.59
Zm00001d047195_P001	Maize	mitochondrion	40.72	61.82
Zm00001d024635_P001	Maize	mitochondrion	60.28	61.26
Zm00001d049583_P003	Maize	cytosol, mitochondrion, nucleus, plastid	59.68	60.4
TraesCS5B01G115900.1	Wheat	plastid	57.68	59.83
GSMUA_Achr4P20410_001	Banana	cytosol	62.28	59.43
TraesCS5D01G125500.1	Wheat	nucleus	58.08	54.09
HORVU5Hr1G037600.2	Barley	cytosol, nucleus	59.08	50.77
CDY58774	Canola	plastid	40.32	40.4
CDX87288	Canola	plastid	40.32	40.32
CDX92166	Canola	plastid	34.93	34.65
CDX95817	Canola	plastid	34.73	34.59
CDY35761	Canola	mitochondrion	27.94	31.32
CDY45921	Canola	mitochondrion	27.94	31.32
CDX97443	Canola	cytosol	18.56	30.9
CDX86330	Canola	mitochondrion	27.35	30.04
CDY54516	Canola	mitochondrion	27.15	30.02
CDY29908	Canola	cytoskeleton, cytosol, nucleus	19.16	29.91
CDY20944	Canola	cytosol	17.96	29.51
CDY65077	Canola	cytosol	19.76	29.46
CDY35188	Canola	cytosol	18.96	29.32
CDY13869	Canola	cytosol	19.76	29.29
CDX92876	Canola	cytoskeleton, cytosol, nucleus	18.56	29.25
CDY05498	Canola	cytosol	19.16	28.83
CDY54902	Canola	cytosol	19.16	28.83
CDY37986	Canola	cytosol	13.57	28.81
CDY27963	Canola	cytosol	18.76	28.57
CDX67894	Canola	endoplasmic reticulum, golgi	18.56	28.44
CDY58657	Canola	cytosol	18.36	28.22
CDY64940	Canola	nucleus	18.36	28.05
CDY20637	Canola	cytosol	17.76	27.81
CDY38388	Canola	cytosol	18.96	27.78
CDY11430	Canola	golgi	19.16	27.75
CDX76646	Canola	golgi	19.16	27.75
CDY59898	Canola	endoplasmic reticulum, golgi	19.16	27.67
CDY07893	Canola	cytosol	17.76	27.55
CDY68815	Canola	cytoskeleton, cytosol, nucleus	18.36	27.54
CDY63310	Canola	endoplasmic reticulum	18.96	27.38
CDX89142	Canola	endoplasmic reticulum	18.96	27.38
CDX80523	Canola	cytosol	17.37	27.1
CDX88188	Canola	cytosol	17.37	27.1
CDY22173	Canola	cytosol	17.96	26.79
CDX83026	Canola	cytosol	17.17	26.22
CDY45143	Canola	cytoskeleton, cytosol, nucleus	17.17	25.98
CDY30900	Canola	cytoskeleton, cytosol, nucleus	17.37	25.82
CDY36915	Canola	cytosol	17.17	25.75
CDX90134	Canola	mitochondrion	21.96	25.58
CDY65546	Canola	nucleus	21.36	25.42
CDX92386	Canola	nucleus	21.36	25.36
CDX92385	Canola	nucleus	21.16	25.12
CDX68447	Canola	cytosol	17.17	25.07
CDY09117	Canola	nucleus	21.16	25.06
CDX88812	Canola	nucleus	20.36	25.0
CDX70980	Canola	nucleus	19.76	24.32
CDY21803	Canola	nucleus	15.57	23.08
CDY24146	Canola	cytosol	17.37	23.08
CDY35719	Canola	mitochondrion	21.76	21.93
CDY14974	Canola	nucleus	10.98	15.9
CDY66166	Canola	plastid	10.98	15.8
CDY16617	Canola	nucleus	5.59	13.46
CDY20589	Canola	nucleus	10.18	12.98
CDY20977	Canola	nucleus	10.38	12.9
CDX97927	Canola	nucleus	10.58	12.24
CDY67277	Canola	cytosol, nucleus, plastid	10.38	11.95

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	GO:A0A078BX30	EnsemblPlants:CDX69371
ProteinID:CDX69371	ProteinID:CDX69371.1	InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072
GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00131224001	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684
PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096
SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TIGRFAMs:TIGR02349	UniParc:UPI0004EEE608
SEG:seg	:	:	:	:	:

Description

BnaC01g00820D

Coordinates

chrLK031789:-:4416294..4419247

Molecular Weight (calculated)

54317.2 Da

IEP (calculated)

9.854

GRAVY (calculated)

-0.360

Length

501 amino acids

Sequence
(BLAST)

001: MLRKLNTKLK KGGWSVRSLS FVERAFLIYR TTLSLSLLLF SRRHPFDNGE CSMALIQFGS SSCVAQWGIR RPQVAVKASF YPTRLESHHD NCCISQINCL
101: GASQSSMFSH GSLPFLSLVM GQSRNSHSRR GARFTVRADT DFYSVLGVSK TATKAEIKSA YRKLARSYHP DVNKDAGAED KFKEISNAYE ILSDDEKRSL
201: YDRYGEAGVK GAGMGGMGDY SNPFDLFESL FEGMGGMGGG MGSRGGSRSR AIDGEDEYYS LILDFKEAVF GIEKEIEISR LESCGTCNGS GAKAGTKPTK
301: CKTCGGQGQV VASTRTPLGV FQQVMTCSPC NGTGEVSKPC GACSGDGRVR RTKRISLKVP AGVDSGSRLR VRGEGNAGKR GGSSGDLFAV IEVIPDPILK
401: RDDTNILYTC KISYVDAILG TTLKVPTVDG TVDLKVPAGT QPSTTLVMAK KGVPVLNKSK MRGDQLVRVQ VEIPKRLSKE EKKLVEELAD MSKNKVANSR
501: R

Best Arabidopsis Sequence Match ( AT4G39960.1 )
(BLAST)

001: MALIQFGSSC VAQWGILRPR FAVKAFYPSR LESHQDNCIS QINCLGASRS SMFAQGSLPF LSLTGVSPNT HSRRGARFTV RADTDFYSVL GVSKNATKAE
101: IKSAYRKLAR SYHPDVNKDA GAEDKFKEIS NAYEILSDDE KRSLYDRYGE AGVKGAGMGG MGDYSNPFDL FESLFEGMGG MGGMGGGMGS RGSRSRAIDG
201: EDEYYSLILN FKEAVFGIEK EIEISRLESC GTCNGSGAKA GTKPTKCKTC GGQGQVVAST RTPLGVFQQV MTCSPCNGTG EISKPCGACS GDGRVRRTKR
301: ISLKVPAGVD SGSRLRVRGE GNAGKRGGSP GDLFAVIEVI PDPVLKRDDT NILYTCKISY VDAILGTTLK VPTVDGEVDL KVPAGTQPST TLVMAKKGVP
401: VLNKSKMRGD QLVRVQVEIP KRLSKEEKML VEELADMSKN KVANSRR

Arabidopsis Description

AT4g39960/T5J17_130 [Source:UniProtKB/TrEMBL;Acc:Q940V1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.