CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97564	Soybean	plastid	96.59	96.59
KRH59311	Soybean	plastid	82.73	84.06
KRH43163	Soybean	plastid	82.95	83.52
Solyc01g105340.2.1	Tomato	plastid	63.86	79.6
PGSC0003DMT400032760	Potato	plastid	74.55	73.71
CDX89453	Canola	plastid	75.45	73.45
AT2G22360.1	Thale cress	plastid	73.64	73.3
Bra030245.1-P	Field mustard	plastid	75.23	73.23
CDY25588	Canola	plastid	75.23	72.91
AT4G39960.1	Thale cress	mitochondrion, plastid	73.41	72.26
TraesCS5A01G115000.1	Wheat	plastid	67.73	71.81
VIT_00s0324g00040.t01	Wine grape	plastid	77.05	70.48
Os05t0334400-01	Rice	mitochondrion, plastid	71.59	70.47
Os05t0334000-01	Rice	mitochondrion, plastid	71.59	70.47
Os05t0333500-01	Rice	mitochondrion, plastid	71.59	70.47
GSMUA_Achr3P00920_001	Banana	mitochondrion	71.36	69.47
GSMUA_Achr1P15780_001	Banana	plastid	70.23	69.44
EES13204	Sorghum	plastid	69.09	67.86
CDY63891	Canola	cytosol	72.95	66.05
CDX69371	Canola	mitochondrion	72.73	63.87
TraesCS5B01G115900.1	Wheat	plastid	68.64	62.53
Zm00001d024635_P001	Maize	mitochondrion	69.09	61.66
Zm00001d049583_P003	Maize	cytosol, mitochondrion, nucleus, plastid	68.64	61.01
Zm00001d047195_P001	Maize	mitochondrion	45.68	60.91
Bra011820.1-P	Field mustard	cytosol	72.5	60.3
GSMUA_Achr4P20410_001	Banana	cytosol	71.82	60.19
TraesCS5D01G125500.1	Wheat	nucleus	68.41	55.95
HORVU5Hr1G037600.2	Barley	cytosol, nucleus	69.09	52.14
KRH09715	Soybean	nucleus, plastid	46.59	41.58
KRH44477	Soybean	plastid	40.23	39.86
KRH23590	Soybean	nucleus	31.14	38.38
KRH61858	Soybean	cytosol	12.05	37.32
KRH13903	Soybean	mitochondrion	35.0	34.68
KRH43470	Soybean	mitochondrion	34.77	34.46
KRH36456	Soybean	mitochondrion	34.09	33.86
KRH27511	Soybean	mitochondrion	33.86	33.63
KRH48662	Soybean	nucleus, plastid	37.5	31.43
KRH10937	Soybean	cytosol	22.73	29.5
KRH52529	Soybean	cytosol	21.82	29.45
KRH69388	Soybean	cytosol	18.41	29.35
KRH74747	Soybean	cytosol	18.41	29.24
KRH65726	Soybean	nucleus	22.27	29.08
KRG88624	Soybean	nucleus	22.27	29.08
KRH25647	Soybean	nucleus	22.95	28.94
KRH68242	Soybean	endoplasmic reticulum	22.5	28.86
KRH00241	Soybean	cytosol, nucleus	22.05	28.61
KRG96505	Soybean	nucleus	22.27	28.57
KRH75968	Soybean	nucleus	21.82	28.49
KRH61857	Soybean	cytosol, nucleus	7.5	28.45
KRH72418	Soybean	mitochondrion	29.77	27.93
KRH55895	Soybean	endoplasmic reticulum, nucleus	22.27	27.84
KRH16800	Soybean	mitochondrion	29.55	27.72
KRG99186	Soybean	cytosol	18.18	27.68
KRH21363	Soybean	cytosol	19.32	27.6
KRH49388	Soybean	cytosol	21.59	27.46
KRH45833	Soybean	cytosol	17.95	27.34
KRH26709	Soybean	nucleus	25.68	27.1
KRH10940	Soybean	cytosol	20.68	27.08
KRH22611	Soybean	nucleus	25.45	26.86
KRH21362	Soybean	cytosol	20.68	26.76
KRH63417	Soybean	nucleus	12.27	26.6
KRH69236	Soybean	endoplasmic reticulum	20.91	26.59
KRH48754	Soybean	endoplasmic reticulum	25.23	26.43
KRG88903	Soybean	nucleus	25.0	26.38
KRH66593	Soybean	endoplasmic reticulum	25.0	26.19
KRH25334	Soybean	nucleus	24.77	26.14
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	15.45	25.86
KRH54495	Soybean	nucleus	19.77	24.79
KRH63415	Soybean	cytosol	7.05	21.09
KRH60063	Soybean	endoplasmic reticulum, golgi	9.09	20.2
KRH40259	Soybean	cytosol	7.27	20.13
KRH55068	Soybean	cytosol	5.0	16.06
KRH10414	Soybean	cytosol	11.59	13.39
KRH44054	Soybean	cytosol	11.59	13.28
KRH64663	Soybean	plastid	10.23	12.71
KRG90292	Soybean	cytosol, nucleus, plastid	6.14	9.44

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100786143	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	EMBL:ACUP02007137
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_11G241000	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950
GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	UniProt:I1LNJ9	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	ProteinID:KRH31309.1	EnsemblPlants:KRH31310	ProteinID:KRH31310
ProteinID:KRH31310.1	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096	PANTHER:PTHR43096:SF10	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TIGRFAMs:TIGR02349	UniParc:UPI000233C3D2	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:33526493..33531210

Molecular Weight (calculated)

47428.5 Da

IEP (calculated)

9.741

GRAVY (calculated)

-0.438

Length

440 amino acids

Sequence
(BLAST)

001: MAIAPFGNTS ATQWGIHPQI FAGSTGLGKI ASSRNNATSR IRFMAAPCSS FFSRDSLHAL FDKGSSQTLH RRRGSRLIVR ADADYYSVLG VSRNSSKSEI
101: KSAYRKLARS CHPDVNKEPG AEQKFKELSN AYEVLSDDEK RSIYDTYGEA GLKGSGMGMG DFSNPFDLFE TLFEGMGGMG GSRGSWNGAV EGEDEYYSLV
201: LNFKEAVFGV EKEIEIRRLE SCGTCNGSGA KPGTKSSKCS TCGGQGRVVT STRTPLGIFQ QSMTCSSCNG TGETSTPCST CSGEGRVRKT KRISLKVPAG
301: VDSGSRLRVR NEGNAGRRGG SPGDLFVILE VIPDPVLKRD DTNILYTCKV SYIDAILGTT IKVPTVDGMV DLKIPAGTQP SSTLVMAKKG VPLLNKKNMR
401: GDQLVRVQVE IPKKLSKEER KLVEELADLS KGKTAATSRR

Best Arabidopsis Sequence Match ( AT2G22360.1 )
(BLAST)

001: MAIIQLGSTC VAQWSIRPQF AVRAYYPSRI ESTRHQNSSS QVNCLGASKS SMFSHGSLPF LSMTGMSRNM HPPRRGSRFT VRADADYYSV LGVSKNATKA
101: EIKSAYRKLA RNYHPDVNKD PGAEEKFKEI SNAYEVLSDD EKKSLYDRYG EAGLKGAAGF GNGDFSNPFD LFDSLFEGFG GGMGRGSRSR AVDGQDEYYT
201: LILNFKEAVF GMEKEIEISR LESCGTCEGS GAKPGTKPTK CTTCGGQGQV VSAARTPLGV FQQVMTCSSC NGTGEISTPC GTCSGDGRVR KTKRISLKVP
301: AGVDSGSRLR VRGEGNAGKR GGSPGDLFVV IEVIPDPILK RDDTNILYTC KISYIDAILG TTLKVPTVDG TVDLKVPAGT QPSTTLVMAK KGVPVLNKSN
401: MRGDQLVRVQ VEIPKRLSKE EKKLIEELAD MSKNKTANST SR

Arabidopsis Description

DJA6Chaperone protein dnaJ A6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJZ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.