Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 8
- vacuole 6
- plasma membrane 5
- golgi 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96505 | Soybean | nucleus | 96.79 | 96.79 |
| KRH69236 | Soybean | endoplasmic reticulum | 85.42 | 84.68 |
| KRH55068 | Soybean | cytosol | 31.78 | 79.56 |
| EES17752 | Sorghum | endoplasmic reticulum, golgi | 78.13 | 76.57 |
| Zm00001d009783_P004 | Maize | mitochondrion | 76.38 | 74.86 |
| TraesCS1B01G125100.1 | Wheat | nucleus | 76.38 | 74.86 |
| TraesCS1D01G107200.1 | Wheat | nucleus | 76.09 | 74.57 |
| TraesCS1A01G099300.1 | Wheat | nucleus | 75.8 | 74.29 |
| Zm00001d037586_P001 | Maize | endoplasmic reticulum | 76.38 | 71.39 |
| KXG32445 | Sorghum | endoplasmic reticulum | 68.51 | 67.92 |
| HORVU1Hr1G022990.1 | Barley | cytosol | 74.34 | 60.0 |
| Zm00001d009210_P001 | Maize | endoplasmic reticulum | 60.35 | 50.99 |
| KRG88624 | Soybean | nucleus | 36.15 | 36.8 |
| KRH65726 | Soybean | nucleus | 36.15 | 36.8 |
| KRH00241 | Soybean | cytosol, nucleus | 35.86 | 36.28 |
| KRH75968 | Soybean | nucleus | 35.57 | 36.2 |
| KRH61858 | Soybean | cytosol | 14.58 | 35.21 |
| KRH10937 | Soybean | cytosol | 34.69 | 35.1 |
| KRH49388 | Soybean | cytosol | 35.28 | 34.97 |
| KRH69388 | Soybean | cytosol | 27.99 | 34.78 |
| KRH74747 | Soybean | cytosol | 27.7 | 34.3 |
| KRH45833 | Soybean | cytosol | 28.86 | 34.26 |
| KRH25647 | Soybean | nucleus | 34.69 | 34.1 |
| KRG99186 | Soybean | cytosol | 28.57 | 33.91 |
| KRH55895 | Soybean | endoplasmic reticulum, nucleus | 33.82 | 32.95 |
| KRH61857 | Soybean | cytosol, nucleus | 11.08 | 32.76 |
| KRH52529 | Soybean | cytosol | 30.9 | 32.52 |
| KRH21363 | Soybean | cytosol | 29.15 | 32.47 |
| KRH66593 | Soybean | endoplasmic reticulum | 38.19 | 31.19 |
| KRH48754 | Soybean | endoplasmic reticulum | 37.9 | 30.95 |
| KRH54495 | Soybean | nucleus | 31.2 | 30.48 |
| KRH21362 | Soybean | cytosol | 30.03 | 30.29 |
| KRH22611 | Soybean | nucleus | 36.73 | 30.22 |
| KRH10940 | Soybean | cytosol | 29.45 | 30.06 |
| KRH63417 | Soybean | nucleus | 17.78 | 30.05 |
| KRH26709 | Soybean | nucleus | 36.44 | 29.98 |
| KRH63415 | Soybean | cytosol | 12.83 | 29.93 |
| KRH25334 | Soybean | nucleus | 35.86 | 29.5 |
| KRH12423 | Soybean | cytoskeleton, cytosol, nucleus | 22.45 | 29.28 |
| KRG88903 | Soybean | nucleus | 35.57 | 29.26 |
| KRH40259 | Soybean | cytosol | 12.54 | 27.04 |
| KRH27511 | Soybean | mitochondrion | 30.32 | 23.48 |
| KRH36456 | Soybean | mitochondrion | 30.03 | 23.25 |
| KRH59311 | Soybean | plastid | 29.15 | 23.09 |
| KRG97564 | Soybean | plastid | 29.45 | 22.95 |
| KRH43163 | Soybean | plastid | 29.15 | 22.88 |
| KRH60063 | Soybean | endoplasmic reticulum, golgi | 13.12 | 22.73 |
| KRH31310 | Soybean | nucleus, plastid | 28.86 | 22.5 |
| KRH43470 | Soybean | mitochondrion | 28.57 | 22.07 |
| KRH13903 | Soybean | mitochondrion | 28.57 | 22.07 |
| KRH44477 | Soybean | plastid | 27.11 | 20.95 |
| KRH09715 | Soybean | nucleus, plastid | 28.28 | 19.68 |
| KRH10414 | Soybean | cytosol | 21.28 | 19.16 |
| KRH44054 | Soybean | cytosol | 19.83 | 17.71 |
| KRH48662 | Soybean | nucleus, plastid | 26.82 | 17.52 |
| KRH64663 | Soybean | plastid | 18.08 | 17.51 |
| KRH16800 | Soybean | mitochondrion | 23.91 | 17.48 |
| KRH23590 | Soybean | nucleus | 18.08 | 17.37 |
| KRH72418 | Soybean | mitochondrion | 23.62 | 17.27 |
| KRG90292 | Soybean | cytosol, nucleus, plastid | 13.41 | 16.08 |
Protein Annotations
| Gene3D:1.10.287.110 | EntrezGene:100799701 | MapMan:19.1.1.2.1.2 | Gene3D:2.60.260.20 | EMBL:ACUP02002104 | InterPro:DnaJ_C |
| InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS | EnsemblPlantsGene:GLYMA_03G218300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | UniProt:I1JQQ6 |
| InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | EnsemblPlants:KRH68242 | ProteinID:KRH68242 | ProteinID:KRH68242.1 |
| PFAM:PF00226 | PFAM:PF01556 | PRINTS:PR00625 | ScanProsite:PS00636 | PFscan:PS50076 | PANTHER:PTHR43888 |
| PANTHER:PTHR43888:SF14 | SMART:SM00271 | SUPFAM:SSF46565 | SUPFAM:SSF49493 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0002339BF7 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:42186507..42190998
Molecular Weight (calculated)
38807.5 Da
IEP (calculated)
6.719
GRAVY (calculated)
-0.528
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRGATLLF LLCALCYSLI AIAGKSYYDI LQLSKGASDE QIKRAYRKLA LKYHPDKNPG NEEANKKFAE ISNAYEVLSD SEKRNIYDRY GEEGLKQHAA
101: SGGRGGGMNF QDIFSTFFGG GPMEEEEKIV KGDDLVVDLD ATLEDLYMGG TLKVWREKNV LKPAPGKRRC NCRNEVYHKQ IGPGMFQQMT EQVCEQCPNV
201: KYVREGYFIT VDIEKGMQDG QEVLFYEDGE PIIDGESGDL RFRIRTAPHD VFRREGNDLH STVTITLVQA LVGFEKTIKH LDEHLVDIST KEITKPKQVR
301: KFKGEGMPLH MSNKKGDLYV TFEVLFPTSL REEQKTKIKA ILG
101: SGGRGGGMNF QDIFSTFFGG GPMEEEEKIV KGDDLVVDLD ATLEDLYMGG TLKVWREKNV LKPAPGKRRC NCRNEVYHKQ IGPGMFQQMT EQVCEQCPNV
201: KYVREGYFIT VDIEKGMQDG QEVLFYEDGE PIIDGESGDL RFRIRTAPHD VFRREGNDLH STVTITLVQA LVGFEKTIKH LDEHLVDIST KEITKPKQVR
301: KFKGEGMPLH MSNKKGDLYV TFEVLFPTSL REEQKTKIKA ILG
001: MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA
Arabidopsis Description
ERDJ3BDnaJ protein ERDJ3B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZK5]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.