CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g02030.t01	Wine grape	plastid	56.76	61.95
Bra022249.1-P	Field mustard	cytosol, mitochondrion, plastid	48.38	55.46
Solyc03g118500.2.1	Tomato	plastid	53.33	52.63
PGSC0003DMT400036786	Potato	plastid	53.14	52.44
CDX95817	Canola	plastid	50.1	52.29
AT3G17830.1	Thale cress	plastid	51.24	52.03
CDX92166	Canola	plastid	49.9	51.88
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	50.67	48.81
TraesCS4B01G241700.1	Wheat	plastid	46.29	45.42
TraesCS4D01G241300.2	Wheat	plastid	45.52	44.26
Zm00001d028256_P002	Maize	plastid	44.57	43.49
TraesCS4A01G064300.2	Wheat	plastid	44.38	43.15
OQU92981	Sorghum	plastid	44.19	43.04
HORVU4Hr1G066920.5	Barley	mitochondrion	45.14	41.73
KRH09715	Soybean	nucleus, plastid	37.71	40.16
KRH44477	Soybean	plastid	32.95	38.96
KRH43163	Soybean	plastid	32.19	38.67
KRH59311	Soybean	plastid	31.81	38.57
KRG97564	Soybean	plastid	31.62	37.73
KRH23590	Soybean	nucleus	25.52	37.53
KRH31310	Soybean	nucleus, plastid	31.43	37.5
KRH61858	Soybean	cytosol	9.9	36.62
KRH52529	Soybean	cytosol	18.86	30.37
KRH10937	Soybean	cytosol	19.43	30.09
KRH10940	Soybean	cytosol	18.48	28.87
KRH21362	Soybean	cytosol	18.67	28.82
KRH48754	Soybean	endoplasmic reticulum	23.05	28.81
KRH66593	Soybean	endoplasmic reticulum	22.86	28.57
KRH00241	Soybean	cytosol, nucleus	18.29	28.32
KRH69388	Soybean	cytosol	14.86	28.26
KRH74747	Soybean	cytosol	14.86	28.16
KRG88624	Soybean	nucleus	17.9	27.89
KRH65726	Soybean	nucleus	17.9	27.89
KRH72418	Soybean	mitochondrion	24.76	27.72
KRH21363	Soybean	cytosol	16.19	27.6
KRH49388	Soybean	cytosol	18.1	27.46
KRH75968	Soybean	nucleus	17.52	27.3
KRH25647	Soybean	nucleus	18.1	27.22
KRH16800	Soybean	mitochondrion	24.0	26.87
KRG96505	Soybean	nucleus	17.52	26.82
KRH68242	Soybean	endoplasmic reticulum	17.52	26.82
KRH26709	Soybean	nucleus	21.14	26.62
KRH13903	Soybean	mitochondrion	22.48	26.58
KRH43470	Soybean	mitochondrion	22.48	26.58
KRH55895	Soybean	endoplasmic reticulum, nucleus	17.71	26.42
KRH27511	Soybean	mitochondrion	22.29	26.41
KRH36456	Soybean	mitochondrion	22.29	26.41
KRG88903	Soybean	nucleus	20.95	26.38
KRH25334	Soybean	nucleus	20.95	26.38
KRH22611	Soybean	nucleus	20.95	26.38
KRH45833	Soybean	cytosol	14.48	26.3
KRG99186	Soybean	cytosol	14.29	25.95
KRH69236	Soybean	endoplasmic reticulum	16.95	25.72
KRH63417	Soybean	nucleus	9.71	25.12
KRH54495	Soybean	nucleus	16.57	24.79
KRH61857	Soybean	cytosol, nucleus	5.33	24.14
KRH40259	Soybean	cytosol	7.24	23.9
KRH63415	Soybean	cytosol	6.67	23.81
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	11.81	23.57
KRH55068	Soybean	cytosol	5.14	19.71
KRH60063	Soybean	endoplasmic reticulum, golgi	7.43	19.7
KRH10414	Soybean	cytosol	10.48	14.44
KRH44054	Soybean	cytosol	9.9	13.54
KRH64663	Soybean	plastid	8.57	12.71
KRG90292	Soybean	cytosol, nucleus, plastid	5.71	10.49

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100782135	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	EMBL:ACUP02004258
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_07G103600	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sf	UniProt:I1KJ68	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
EnsemblPlants:KRH48662	ProteinID:KRH48662	ProteinID:KRH48662.1	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684
PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096
PANTHER:PTHR43096:SF26	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TMHMM:TMhelix
UniParc:UPI0002339227	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:9945160..9951647

Molecular Weight (calculated)

57889.6 Da

IEP (calculated)

8.940

GRAVY (calculated)

-0.458

Length

525 amino acids

Sequence
(BLAST)

001: MPLIHTTPPL HYAISTLINA PSSSSSTLSA ATFGSNFLRK IHNPIFRFST ARNRSRAAVV RAKAGTDYYS TLNVGPNATL QEIKASYRKL ARKYHPDMNK
101: SPGAEDKFKE ISAAYEVLSD DEKRSLYDRF GESGLQGDNG GSTGAPGVDP FDLFDTFFGR SDGVFGVGDE GSFNFNFRNK RNHVHDIRYD LHLSFEESIF
201: GGQREIEVSC FQTCNMCDGT GAKSKNCIKQ CTNCGGRGGE MKTQRTPFGM MSQVSTCSKC GGLGKIITDQ CRRCDGSGQV QSKQTMEVEI PPGVNDGDTM
301: QIQGQGNFDK KRQITGDLYV VLHVDEKQGI WREGLHLYSK ISIDFTDAIL GSVKKVDTVE GLRDLQIPSG IQPGDSVKLS CLGVPDINKP SVRGDHYFIV
401: NVLIPKDISG TERVLVEQLA SLRASSKRDS LSSNDNGIPK GKFNEFIKRD PKGDASRKGI KNVGSLWGSI KNFLRGGQSE ERFASISMDT KVFLWRSGHQ
501: NPVPDYFFVV FIITWIFASI AKSKH

Best Arabidopsis Sequence Match ( AT3G17830.1 )
(BLAST)

001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET

Arabidopsis Description

At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.