CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09715	Soybean	nucleus, plastid	93.56	67.75
KRH44477	Soybean	plastid	61.9	49.77
VIT_09s0002g07210.t01	Wine grape	plastid	67.79	49.49
AT1G80030.2	Thale cress	plastid	66.95	47.8
Solyc03g116790.2.1	Tomato	plastid	64.99	46.59
CDY58774	Canola	plastid	64.71	46.2
Bra035201.1-P	Field mustard	plastid	64.71	46.11
CDX87288	Canola	plastid	64.71	46.11
GSMUA_Achr11P...	Banana	plastid	62.18	45.31
KXG31305	Sorghum	plastid	59.38	42.66
TraesCS6A01G372700.1	Wheat	plastid	58.26	42.62
TraesCS6D01G356800.1	Wheat	plastid	57.7	42.39
Os02t0804500-01	Rice	plastid	57.7	42.3
TraesCS6B01G410600.1	Wheat	plastid	57.7	41.78
HORVU0Hr1G017450.8	Barley	cytosol	50.7	37.4
Zm00001d018413_P003	Maize	mitochondrion	58.26	36.56
Zm00001d052001_P002	Maize	plastid	56.86	33.06
KRH59311	Soybean	plastid	38.66	31.87
KRH31310	Soybean	nucleus, plastid	38.38	31.14
KRH43163	Soybean	plastid	38.1	31.12
KRG97564	Soybean	plastid	38.1	30.91
KRH61857	Soybean	cytosol, nucleus	8.96	27.59
KRH63415	Soybean	cytosol	10.64	25.85
KRH48662	Soybean	nucleus, plastid	37.53	25.52
KRH74747	Soybean	cytosol	18.77	24.19
KRH69388	Soybean	cytosol	18.49	23.91
KRH60063	Soybean	endoplasmic reticulum, golgi	12.61	22.73
KRG99186	Soybean	cytosol	18.21	22.49
KRH45833	Soybean	cytosol	17.93	22.15
KRH36456	Soybean	mitochondrion	26.61	21.44
KRH27511	Soybean	mitochondrion	26.33	21.22
KRH43470	Soybean	mitochondrion	26.05	20.95
KRH16800	Soybean	mitochondrion	27.45	20.9
KRH72418	Soybean	mitochondrion	27.17	20.68
KRH52529	Soybean	cytosol	18.77	20.55
KRH13903	Soybean	mitochondrion	25.49	20.5
KRH10937	Soybean	cytosol	17.93	18.88
KRH25647	Soybean	nucleus	18.21	18.62
KRH00241	Soybean	cytosol, nucleus	17.65	18.58
KRH55895	Soybean	endoplasmic reticulum, nucleus	18.21	18.47
KRH61858	Soybean	cytosol	7.28	18.31
KRH54495	Soybean	nucleus	17.93	18.23
KRH66593	Soybean	endoplasmic reticulum	21.29	18.1
KRH48754	Soybean	endoplasmic reticulum	21.29	18.1
KRH68242	Soybean	endoplasmic reticulum	17.37	18.08
KRG88624	Soybean	nucleus	16.81	17.8
KRH65726	Soybean	nucleus	16.81	17.8
KRG96505	Soybean	nucleus	17.09	17.78
KRH49388	Soybean	cytosol	17.09	17.63
KRH40259	Soybean	cytosol	7.84	17.61
KRH75968	Soybean	nucleus	16.53	17.51
KRH69236	Soybean	endoplasmic reticulum	16.81	17.34
KRH55068	Soybean	cytosol	6.44	16.79
KRH21362	Soybean	cytosol	15.97	16.76
KRH10940	Soybean	cytosol	15.41	16.37
KRH25334	Soybean	nucleus	18.21	15.59
KRH26709	Soybean	nucleus	18.21	15.59
KRG88903	Soybean	nucleus	18.21	15.59
KRH22611	Soybean	nucleus	17.93	15.35
KRH21363	Soybean	cytosol	12.89	14.94
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	9.8	13.31
KRH63417	Soybean	nucleus	7.0	12.32
KRH44054	Soybean	cytosol	13.17	12.24
KRH10414	Soybean	cytosol	12.89	12.07
KRG90292	Soybean	cytosol, nucleus, plastid	9.24	11.54
KRH64663	Soybean	plastid	8.68	8.76

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.60.260.20	EMBL:ACUP02008474	InterPro:DnaJ_C	InterPro:DnaJ_domain
EnsemblPlantsGene:GLYMA_13G366300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0031072	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K7M3Y8	EnsemblPlants:KRH23590
ProteinID:KRH23590	ProteinID:KRH23590.1	PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	PFscan:PS50076
SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	UniParc:UPI000233B384	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:45217310..45223538

Molecular Weight (calculated)

38661.9 Da

IEP (calculated)

9.439

GRAVY (calculated)

-0.430

Length

357 amino acids

Sequence
(BLAST)

001: MALTTLSLLP PSTPPCFCGT LHLRSHNSFL SIHSPSSSSP FPSFSSISIP NHSPTRRRFH TVFAASSDYY STLGIPKSAT GKEIKAAYRR LARQYHPDVN
101: KEPGATEKFK EISAAYEVSV CPNCGGDGEV ISEYCRKCNG EGRIRVNKNI KVKVPPGVSS GSILRVTGEG DAGPRGGPPG DLYVYLDVQV IPGIQRDDIN
201: LVSIISISYL DAILGAVVKV KTVEGISELQ VPAGTQPGDV LVLARKGVPK LNKPSIRGDH LFTVKVTIPK RISTKERELL EELASLGDTS RRSKSRPRTH
301: SSTGGTESPK AQKDESTTST VEEKTEKSED ENDVWNKLKD FAGSVANGAL KWFKDNL

Best Arabidopsis Sequence Match ( AT1G80030.1 )
(BLAST)

001: MAALASPSLI PSSLCFAAAA DGPRSLSSNF SAFSDGGSNF RYHKSFLSLS SSSSSSTPYR NRRGRSLVVF ATSGDYYATL GVSKSANNKE IKAAYRRLAR
101: QYHPDVNKEP GATEKFKEIS AAYEVLSDEQ KRALYDQYGE AGVKSTVGGA SGPYTSNPFD LFETFFGASM GGFPGMDQAD FGRTRRSRVT KGEDLRYDIT
201: LELSEAIFGS EKEFDLTHLE TCEACAGTGA KAGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSICPNCGG DGEVISENCR KCSGEGRVRI KKSIKVKIPP
301: GVSAGSILRV AGEGDSGPRG GPPGDLYVYL DVEDVRGIER DGINLLSTLS ISYLDAILGA VVKVKTVEGD TELQIPPGTQ PGDVLVLAKK GVPKLNRPSI
401: RGDHLFTVKV SVPNQISAGE RELLEELASL KDTSSNRSRT RAKPQQPSTL STAPSGSENK KDEVKEENEE PEQENYLWNN IKEFAGSVAN GALKWLRDNL

Arabidopsis Description

Molecular chaperone Hsp40/DnaJ family protein [Source:UniProtKB/TrEMBL;Acc:Q0WN54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.