Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH48754 Soybean endoplasmic reticulum 96.67 96.67
GSMUA_Achr11P... Banana cytosol 70.95 78.22
GSMUA_Achr8P11020_001 Banana nucleus 73.57 77.25
EES07516 Sorghum nucleus 75.48 75.48
Zm00001d017476_P001 Maize plasma membrane 75.48 75.12
PGSC0003DMT400018083 Potato nucleus 74.52 74.7
KRG88903 Soybean nucleus 74.05 74.58
KRH25334 Soybean nucleus 74.05 74.58
VIT_15s0021g02090.t01 Wine grape cytosol 78.57 74.49
Solyc01g090550.2.1 Tomato nucleus 74.76 74.06
PGSC0003DMT400066980 Potato nucleus 73.57 73.57
Os02t0656500-01 Rice nucleus 73.57 73.57
OQU82085 Sorghum nucleus 72.62 72.97
Os04t0549600-01 Rice cytosol 72.14 72.84
KRH22611 Soybean nucleus 71.67 72.18
TraesCS6D01G232600.1 Wheat nucleus 72.86 72.0
TraesCS6B01G274600.1 Wheat nucleus 72.86 72.0
TraesCS6A01G250800.1 Wheat nucleus 72.86 72.0
KRH26709 Soybean nucleus 71.43 71.94
HORVU0Hr1G016360.1 Barley cytosol 27.86 66.1
HORVU0Hr1G018300.1 Barley plastid 72.38 62.81
KRG96505 Soybean nucleus 31.67 38.78
KRH68242 Soybean endoplasmic reticulum 31.19 38.19
KRH61858 Soybean cytosol 12.86 38.03
KRH69388 Soybean cytosol 24.52 37.32
KRH10937 Soybean cytosol 30.0 37.17
KRH74747 Soybean cytosol 24.05 36.46
KRG88624 Soybean nucleus 28.81 35.91
KRH65726 Soybean nucleus 28.81 35.91
KRH00241 Soybean cytosol, nucleus 28.81 35.69
KRH69236 Soybean endoplasmic reticulum 29.29 35.55
KRH25647 Soybean nucleus 29.52 35.53
KRH52529 Soybean cytosol 27.38 35.28
KRH55895 Soybean endoplasmic reticulum, nucleus 29.52 35.23
KRH40259 Soybean cytosol 13.33 35.22
KRH49388 Soybean cytosol 28.81 34.97
KRG99186 Soybean cytosol 24.05 34.95
KRH75968 Soybean nucleus 27.86 34.72
KRH61857 Soybean cytosol, nucleus 9.52 34.48
KRH21363 Soybean cytosol 25.0 34.09
KRH63415 Soybean cytosol 11.9 34.01
KRH45833 Soybean cytosol 23.33 33.91
KRH10940 Soybean cytosol 26.67 33.33
KRH21362 Soybean cytosol 26.43 32.65
KRH12423 Soybean cytoskeleton, cytosol, nucleus 20.0 31.94
KRH54495 Soybean nucleus 26.67 31.91
KRH63417 Soybean nucleus 14.76 30.54
KRH55068 Soybean cytosol 9.29 28.47
KRH60063 Soybean endoplasmic reticulum, golgi 12.38 26.26
KRH27511 Soybean mitochondrion 27.62 26.19
KRH59311 Soybean plastid 26.67 25.87
KRH36456 Soybean mitochondrion 27.14 25.73
KRH43163 Soybean plastid 26.67 25.63
KRH44477 Soybean plastid 26.9 25.45
KRH13903 Soybean mitochondrion 26.9 25.45
KRG97564 Soybean plastid 26.43 25.23
KRH43470 Soybean mitochondrion 26.43 25.0
KRH31310 Soybean nucleus, plastid 26.19 25.0
KRH09715 Soybean nucleus, plastid 28.1 23.94
KRH48662 Soybean nucleus, plastid 28.57 22.86
KRH23590 Soybean nucleus 18.1 21.29
KRH10414 Soybean cytosol 19.29 21.26
KRH44054 Soybean cytosol 18.57 20.31
KRH16800 Soybean mitochondrion 22.62 20.26
KRH72418 Soybean mitochondrion 22.38 20.04
KRG90292 Soybean cytosol, nucleus, plastid 13.33 19.58
KRH64663 Soybean plastid 16.19 19.21
Protein Annotations
Gene3D:1.10.287.110EntrezGene:100800590MapMan:19.1.5.2Gene3D:2.10.230.10Gene3D:2.60.260.20EMBL:ACUP02001985
InterPro:DnaJInterPro:DnaJ_CInterPro:DnaJ_domainInterPro:DnaJ_domain_CSEnsemblPlantsGene:GLYMA_03G116600GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0006457GO:GO:0006950
GO:GO:0008150GO:GO:0009408GO:GO:0009628GO:GO:0009987GO:GO:0031072GO:GO:0046872
GO:GO:0051082InterPro:HSP40/DnaJ_pept-bdInterPro:HSP_DnaJ_Cys-rich_domInterPro:HSP_DnaJ_Cys-rich_dom_sfUniProt:I1JMV0InterPro:IPR001305
InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfEnsemblPlants:KRH66593ProteinID:KRH66593ProteinID:KRH66593.1
HAMAP:MF_01152PFAM:PF00226PFAM:PF00684PFAM:PF01556PRINTS:PR00625ScanProsite:PS00636
PFscan:PS50076PFscan:PS51188PANTHER:PTHR43888PANTHER:PTHR43888:SF11SMART:SM00271SUPFAM:SSF46565
SUPFAM:SSF49493SUPFAM:SSF57938UniParc:UPI0002339A77SEG:seg::
Description
hypothetical protein
Coordinates
chr3:+:32527538..32532097
Molecular Weight (calculated)
47150.7 Da
IEP (calculated)
7.092
GRAVY (calculated)
-0.864
Length
420 amino acids
Sequence
(BLAST)
001: MFGRGGPRRS DNSKYYDILG ISKNASEDEI KKAYRKAAMK NHPDKGGDPE KFKELGQAYE VLSDPEKKEL YDQYGEDALK EGMGGGGSFH NPFDIFESFF
101: GGASFGGGGS SRGRRQKHGE DVVHSLKVSL EDVYNGTTKK LSLSRNILCP KCKGKGSKSG TAGRCFGCKG TGMKITRRQI GLGMIQQMQH VCPDCRGSGE
201: VINERDKCPL CKGNKVSQEK KVLEVHVEKG MQQGQKIVFE GQADEAPDTI TGDIVFVLQV KDHPKFRREQ DDLYIDHNLS LTEALCGFQF AVKHLDGRQL
301: LIKSNPGEVI KPGQYKAIND EGMPQHNRPF MKGRLYIQFN VDFPDSGFLS PDQCQLLEKV LPQKSSKHVS DMELDDCEET TLHDVNFKEE MRRKQQQQYR
401: EAYDEDDDEP SGQRVQCAQQ
Best Arabidopsis Sequence Match ( AT1G80030.4 )
(BLAST)
001: MAALASPSLI PSSLCFAAAA DGPRSLSSNF SAFSDGGSNF RYHKSFLSLS SSSSSSTPYR NRRGRSLVVF ATSGDYYATL GVSKSANNKE IKAAYRRLAR
101: QYHPDVNKEP GATEKFKEIS AAYEVLSDEQ KRALYDQYGE AGVKSTVGGA SGPYTSNPFD LFETFFGASM GGFPGMDQAD FGRTRRSRVT KGEDLRYDIT
201: LELSEAIFGS EKEFDLTHLE TCEACAGTGA KAGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSICPNCGG DGEVISENCR KCSGEGRVRI KKSIKVKIPP
301: GVSAGSILRV AGEGDSGPRG GPPGDLYVYL DVEDVRGIER DGINLLSTLS ISYLDAILGA VVKVKTVEGD TELQIPPGTQ PGDVLVLAKK GVPKLNRPSI
401: RGDHLFTVKV SVPNQISAGE RELLEELASL KDTSSNRSRT RAKPQQPSTL STAPSGSENK KDEVKEENEE PEQENYLWNN IKEFAG
Arabidopsis Description
Molecular chaperone Hsp40/DnaJ family protein [Source:UniProtKB/TrEMBL;Acc:Q0WN54]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.