CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23590	Soybean	nucleus	67.75	93.56
VIT_09s0002g07210.t01	Wine grape	plastid	73.02	73.62
KRH44477	Soybean	plastid	64.71	71.85
Solyc03g116790.2.1	Tomato	plastid	70.99	70.28
AT1G80030.2	Thale cress	plastid	70.39	69.4
CDY58774	Canola	plastid	68.97	68.0
Bra035201.1-P	Field mustard	plastid	68.76	67.66
CDX87288	Canola	plastid	68.76	67.66
GSMUA_Achr11P...	Banana	plastid	66.53	66.94
Os02t0804500-01	Rice	plastid	63.08	63.86
TraesCS6A01G372700.1	Wheat	plastid	62.88	63.52
TraesCS6D01G356800.1	Wheat	plastid	62.47	63.37
KXG31305	Sorghum	plastid	63.49	62.98
TraesCS6B01G410600.1	Wheat	plastid	62.47	62.47
HORVU0Hr1G017450.8	Barley	cytosol	58.01	59.09
Zm00001d018413_P003	Maize	mitochondrion	63.08	54.66
Zm00001d052001_P002	Maize	plastid	61.66	49.51
KRH59311	Soybean	plastid	41.18	46.88
KRG97564	Soybean	plastid	41.78	46.82
KRH31310	Soybean	nucleus, plastid	41.58	46.59
KRH43163	Soybean	plastid	40.57	45.77
KRH61858	Soybean	cytosol	11.36	39.44
KRH48662	Soybean	nucleus, plastid	40.16	37.71
KRH69388	Soybean	cytosol	18.05	32.25
KRH74747	Soybean	cytosol	17.85	31.77
KRH52529	Soybean	cytosol	20.69	31.29
KRH10937	Soybean	cytosol	21.5	31.27
KRH00241	Soybean	cytosol, nucleus	21.1	30.68
KRH25647	Soybean	nucleus	21.7	30.66
KRH27511	Soybean	mitochondrion	27.18	30.25
KRH55895	Soybean	endoplasmic reticulum, nucleus	21.5	30.11
KRH43470	Soybean	mitochondrion	26.98	29.95
KRH36456	Soybean	mitochondrion	26.77	29.8
KRG88624	Soybean	nucleus	20.28	29.67
KRH65726	Soybean	nucleus	20.28	29.67
KRH13903	Soybean	mitochondrion	26.57	29.5
KRH49388	Soybean	cytosol	20.69	29.48
KRG99186	Soybean	cytosol	17.24	29.41
KRH75968	Soybean	nucleus	19.88	29.08
KRH45833	Soybean	cytosol	17.04	29.07
KRH72418	Soybean	mitochondrion	27.59	29.0
KRH16800	Soybean	mitochondrion	27.59	29.0
KRH48754	Soybean	endoplasmic reticulum	24.34	28.57
KRH61857	Soybean	cytosol, nucleus	6.69	28.45
KRH68242	Soybean	endoplasmic reticulum	19.68	28.28
KRH66593	Soybean	endoplasmic reticulum	23.94	28.1
KRG96505	Soybean	nucleus	19.47	27.99
KRH21363	Soybean	cytosol	17.44	27.92
KRH69236	Soybean	endoplasmic reticulum	19.07	27.17
KRH54495	Soybean	nucleus	19.27	27.07
KRH10940	Soybean	cytosol	18.26	26.79
KRH21362	Soybean	cytosol	18.46	26.76
KRH63417	Soybean	nucleus	10.95	26.6
KRH63415	Soybean	cytosol	7.91	26.53
KRG88903	Soybean	nucleus	21.7	25.66
KRH26709	Soybean	nucleus	21.5	25.42
KRH25334	Soybean	nucleus	21.5	25.42
KRH22611	Soybean	nucleus	21.3	25.18
KRH40259	Soybean	cytosol	8.11	25.16
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	13.39	25.1
KRH60063	Soybean	endoplasmic reticulum, golgi	9.74	24.24
KRH55068	Soybean	cytosol	5.07	18.25
KRH44054	Soybean	cytosol	12.58	16.15
KRH10414	Soybean	cytosol	12.37	16.01
KRG90292	Soybean	cytosol, nucleus, plastid	7.51	12.94
KRH64663	Soybean	plastid	8.11	11.3

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100798567	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	EMBL:ACUP02009107
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_15G006900	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950
GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	UniProt:I1MCE6	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH09715	ProteinID:KRH09715	ProteinID:KRH09715.1
HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096	PANTHER:PTHR43096:SF22	SMART:SM00271	SUPFAM:SSF46565
SUPFAM:SSF49493	SUPFAM:SSF57938	TIGRFAMs:TIGR02349	UniParc:UPI000233B899	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:-:569216..577981

Molecular Weight (calculated)

53355.2 Da

IEP (calculated)

8.775

GRAVY (calculated)

-0.437

Length

493 amino acids

Sequence
(BLAST)

001: MAVTTLSLLP PSTRPCFCGT VHLRSHNSFL SIHSTSSSSF LSFSSISIPN HSPTRRPFHT VLASSSDYYS TLGVPKSATG KEIKAAYRRL ARQYHPDVNK
101: EPGATEKFKE ISAAYEVLSD DKKRALYDQY GEAGVKSAVG GGSSAYTTNP FDLFETFFGP SMGGFGGMDP TGFGTRRRST VTKGEDIRYN FSLEFSEAIF
201: GKEKEFELSH LETCEVCTGT GAKIGSKMRV CSTCGGRGQV MRTEQTPFGL FSQVSVCPNC GGDGEVISEY CRKCNGEGRI RVKKNIKVKV PPGVSSGSIL
301: RVTGEGDAGP RGGPPGDLYV YLDVQEIPGI QRDDINLVSM LSISYLDAIR GAVVKVKTVE GISELQIPAG TQPGDVLVLA RKGVPKLNKP SIRGDHLFTV
401: KVTIPKRIST KERELIEELA TLGDASRRSK SRPRTHSSGG GTESPTAQKD ESPTATVEEK TEKSEDENDV WNKLKDFAGS VANGALKWFK DNL

Best Arabidopsis Sequence Match ( AT1G80030.1 )
(BLAST)

001: MAALASPSLI PSSLCFAAAA DGPRSLSSNF SAFSDGGSNF RYHKSFLSLS SSSSSSTPYR NRRGRSLVVF ATSGDYYATL GVSKSANNKE IKAAYRRLAR
101: QYHPDVNKEP GATEKFKEIS AAYEVLSDEQ KRALYDQYGE AGVKSTVGGA SGPYTSNPFD LFETFFGASM GGFPGMDQAD FGRTRRSRVT KGEDLRYDIT
201: LELSEAIFGS EKEFDLTHLE TCEACAGTGA KAGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSICPNCGG DGEVISENCR KCSGEGRVRI KKSIKVKIPP
301: GVSAGSILRV AGEGDSGPRG GPPGDLYVYL DVEDVRGIER DGINLLSTLS ISYLDAILGA VVKVKTVEGD TELQIPPGTQ PGDVLVLAKK GVPKLNRPSI
401: RGDHLFTVKV SVPNQISAGE RELLEELASL KDTSSNRSRT RAKPQQPSTL STAPSGSENK KDEVKEENEE PEQENYLWNN IKEFAGSVAN GALKWLRDNL

Arabidopsis Description

Molecular chaperone Hsp40/DnaJ family protein [Source:UniProtKB/TrEMBL;Acc:Q0WN54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.