CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49388	Soybean	cytosol	95.87	93.93
KRG88624	Soybean	nucleus	85.55	86.05
KRH65726	Soybean	nucleus	85.25	85.76
VIT_08s0105g00350.t01	Wine grape	cytosol	84.96	85.21
KRH75968	Soybean	nucleus	84.66	85.16
KRH25647	Soybean	nucleus	76.11	73.93
KRH55895	Soybean	endoplasmic reticulum, nucleus	76.11	73.3
KRH10937	Soybean	cytosol	72.57	72.57
KRH21363	Soybean	cytosol	63.42	69.81
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	52.21	67.3
EES17644	Sorghum	cytosol	61.36	66.45
Zm00001d010958_P001	Maize	cytosol	62.24	64.72
KRH63415	Soybean	cytosol	28.02	64.63
KRH21362	Soybean	cytosol	62.83	62.65
TraesCS1A01G070300.1	Wheat	cytosol	61.65	61.65
KRH10940	Soybean	cytosol	61.06	61.61
KRH69388	Soybean	cytosol	49.85	61.23
TraesCS1D01G072800.1	Wheat	nucleus	61.65	60.76
KRH61858	Soybean	cytosol	25.37	60.56
TraesCS1B01G088700.1	Wheat	cytosol	61.65	60.23
KRG99186	Soybean	cytosol	50.44	59.17
KRH45833	Soybean	cytosol	50.15	58.82
KRH52529	Soybean	cytosol	56.34	58.59
KRH74747	Soybean	cytosol	47.79	58.48
KRH61857	Soybean	cytosol, nucleus	19.76	57.76
KRH54495	Soybean	nucleus	59.59	57.55
HORVU1Hr1G015040.2	Barley	plastid	61.36	54.31
GSMUA_Achr6P15600_001	Banana	cytosol	69.91	53.62
KRH63417	Soybean	nucleus	30.97	51.72
KRH40259	Soybean	cytosol	23.3	49.69
KRH60063	Soybean	endoplasmic reticulum, golgi	28.91	49.49
HORVU1Hr1G015060.2	Barley	plastid	33.33	39.65
KRG96505	Soybean	nucleus	36.58	36.15
KRH68242	Soybean	endoplasmic reticulum	36.28	35.86
KRH55068	Soybean	cytosol	13.86	34.31
KRH69236	Soybean	endoplasmic reticulum	34.51	33.81
KRG88903	Soybean	nucleus	36.87	29.98
KRH25334	Soybean	nucleus	36.87	29.98
KRH48754	Soybean	endoplasmic reticulum	36.58	29.52
KRH10414	Soybean	cytosol	33.04	29.4
KRH22611	Soybean	nucleus	35.99	29.26
KRH26709	Soybean	nucleus	35.99	29.26
KRH66593	Soybean	endoplasmic reticulum	35.69	28.81
KRH64663	Soybean	plastid	29.5	28.25
KRH44054	Soybean	cytosol	30.68	27.08
KRG90292	Soybean	cytosol, nucleus, plastid	20.65	24.48
KRH59311	Soybean	plastid	28.32	22.17
KRH31310	Soybean	nucleus, plastid	28.61	22.05
KRG97564	Soybean	plastid	28.61	22.05
KRH43163	Soybean	plastid	28.02	21.74
KRH09715	Soybean	nucleus, plastid	30.68	21.1
KRH27511	Soybean	mitochondrion	27.43	20.99
KRH44477	Soybean	plastid	27.43	20.95
KRH36456	Soybean	mitochondrion	26.84	20.54
KRH13903	Soybean	mitochondrion	25.66	19.59
KRH43470	Soybean	mitochondrion	25.66	19.59
KRH72418	Soybean	mitochondrion	25.37	18.34
KRH16800	Soybean	mitochondrion	25.37	18.34
KRH48662	Soybean	nucleus, plastid	28.32	18.29
KRH23590	Soybean	nucleus	18.58	17.65

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100818358	MapMan:19.1.5.2	Gene3D:2.60.260.20	EMBL:ACUP02011410	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_18G201600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	UniProt:I1N2X9
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH00241	ProteinID:KRH00241	ProteinID:KRH00241.1
PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078
PANTHER:PTHR24078:SF298	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	UniParc:UPI000233F28D	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:48163734..48168274

Molecular Weight (calculated)

37303.4 Da

IEP (calculated)

9.725

GRAVY (calculated)

-0.653

Length

339 amino acids

Sequence
(BLAST)

001: MGVDYYKILQ VDRSAKDEDL KKAYRRLAMK WHPDKNPNNK KEAEAKFKQI SEAYDVLSDP QKRGIYDQYG EEGLNGVPPG AGGFPGGGDG GPTSFRFNPR
101: SADDIFSEFF GFSRPFGGMG DMGGRAGGSG FSRGGPFGED IFAQFRSAAG ESCGHMQRKG AAIERQLPCS LEDLYKGTTK KMKISRDVSD ASGRPSTVEE
201: ILTIEIKPGW KKGTKITFPE KGNEQRGVIP SDLVFIIDEK PHSLFKRDGN DLVVTQKISL VEALTGYTVQ LTTLDGRNLT FPINSTISPT YEEVVKGEGM
301: PIPKEPSKKG NLRIKFNIKF PSRLTSEQKS GIKRLLTSP

Best Arabidopsis Sequence Match ( AT5G01390.1 )
(BLAST)

001: MGVDFYKVLE VDRSANDDEL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYDVLSDP QKRAIYEQYG EEGLNQAPPP GAGGGYPGGS DAGASFRFNP
101: RSADDIFSEF FGFTRPSFGT GSDSRAGPSG FRYGDDIFAS FRAATTGGEA SIPSRKSAPI ERQLPCSLED LYKGVSKKMK ISRDVLDSSG RPTPVEEILT
201: IEIKPGWKKG TKITFLEKGN EHRGVIPSDL VFIVDEKPHP VFKRDGNDLV VMQKISLVDA LTGYTAQVTT LDGRTLTVPV NNVISPSYEE VVKGEGMPIP
301: KDPSRKGNLR IRFIIKFPSK LTTEQKSGIK RMLSP

Arabidopsis Description

DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9M034]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.