CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63415	Soybean	cytosol	39.89	95.24
KRH63417	Soybean	nucleus	49.0	84.73
CDY36915	Canola	cytosol	70.09	73.65
Bra018099.1-P	Field mustard	cytosol	69.8	73.35
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	72.93	73.35
PGSC0003DMT400083040	Potato	cytosol	69.23	72.11
Bra033783.1-P	Field mustard	cytosol	66.67	72.0
CDX83026	Canola	cytosol	67.24	71.95
Solyc06g071110.2.1	Tomato	nucleus	68.95	71.81
Bra019519.1-P	Field mustard	cytosol	67.52	71.39
CDX68447	Canola	cytosol	68.95	70.55
CDY21803	Canola	nucleus	65.81	68.34
AT3G47940.1	Thale cress	cytosol	67.81	68.0
CDY24146	Canola	cytosol	70.09	65.25
KRH69388	Soybean	cytosol	49.86	63.41
KRH74747	Soybean	cytosol	49.57	62.82
KRH45833	Soybean	cytosol	49.57	60.21
KRG99186	Soybean	cytosol	49.57	60.21
KRH00241	Soybean	cytosol, nucleus	57.55	59.59
KRH61857	Soybean	cytosol, nucleus	19.37	58.62
KRG88624	Soybean	nucleus	55.84	58.16
KRH49388	Soybean	cytosol	57.27	58.09
KRH65726	Soybean	nucleus	55.56	57.86
KRH52529	Soybean	cytosol	52.71	56.75
KRH25647	Soybean	nucleus	56.41	56.73
KRH75968	Soybean	nucleus	54.42	56.68
KRH55895	Soybean	endoplasmic reticulum, nucleus	56.13	55.97
KRH10937	Soybean	cytosol	52.99	54.87
KRH21363	Soybean	cytosol	47.29	53.9
KRH60063	Soybean	endoplasmic reticulum, golgi	30.2	53.54
KRH61858	Soybean	cytosol	21.65	53.52
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	38.75	51.71
KRH10940	Soybean	cytosol	48.72	50.89
KRH21362	Soybean	cytosol	49.0	50.59
KRH40259	Soybean	cytosol	19.37	42.77
KRG96505	Soybean	nucleus	31.05	31.78
KRH68242	Soybean	endoplasmic reticulum	30.48	31.2
KRH55068	Soybean	cytosol	11.68	29.93
KRH10414	Soybean	cytosol	32.48	29.92
KRH69236	Soybean	endoplasmic reticulum	29.34	29.77
KRG88903	Soybean	nucleus	34.47	29.02
KRH25334	Soybean	nucleus	34.47	29.02
KRH44054	Soybean	cytosol	31.34	28.65
KRH64663	Soybean	plastid	28.49	28.25
KRH22611	Soybean	nucleus	33.33	28.06
KRH26709	Soybean	nucleus	33.05	27.82
KRH48754	Soybean	endoplasmic reticulum	32.76	27.38
KRH66593	Soybean	endoplasmic reticulum	31.91	26.67
KRG90292	Soybean	cytosol, nucleus, plastid	20.23	24.83
KRH59311	Soybean	plastid	25.36	20.55
KRH43163	Soybean	plastid	25.36	20.37
KRG97564	Soybean	plastid	25.07	20.0
KRH27511	Soybean	mitochondrion	25.07	19.86
KRH31310	Soybean	nucleus, plastid	24.79	19.77
KRH36456	Soybean	mitochondrion	24.5	19.41
KRH43470	Soybean	mitochondrion	24.5	19.37
KRH13903	Soybean	mitochondrion	24.5	19.37
KRH09715	Soybean	nucleus, plastid	27.07	19.27
KRH44477	Soybean	plastid	23.65	18.69
KRH23590	Soybean	nucleus	18.23	17.93
KRH72418	Soybean	mitochondrion	23.36	17.48
KRH16800	Soybean	mitochondrion	23.36	17.48
KRH48662	Soybean	nucleus, plastid	24.79	16.57

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100781572	MapMan:19.1.5.2	Gene3D:2.60.260.20	EMBL:ACUP02003532	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_06G189700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	UniProt:I1KCP0
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH54495	ProteinID:KRH54495	ProteinID:KRH54495.1
PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078
PANTHER:PTHR24078:SF524	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	UniParc:UPI0002339453	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:16634025..16639587

Molecular Weight (calculated)

38700.9 Da

IEP (calculated)

9.453

GRAVY (calculated)

-0.630

Length

351 amino acids

Sequence
(BLAST)

001: MGMDYYNILK VNRNASDDDL KKAYKRLARI WHPDKNPVNK TEAEAKFKRI SEAYDVLSDP QKRQIYDLYG EEALKSGQFP PPPQSSSSSS SRAFHHHHHH
101: HRQNNNPPPA SASSFRFNPR DADDIYAEFF GPDDIGAGAS SRRGGGPDAF FRTSNGGGAA FSASAAAGRK AAAVENALPC SLEDLYKGVK KKMKISRNVY
201: DAFGKCGDVE EILTIEIKPG WKKGTKITFP EKGNREPGVI PADLIFVIDE KPHALYRRDG NDLVINQEIT LLEALTGKTL DLTTLDGRSL MIPLTDIVKP
301: GAEVVVPNEG MPISKEPGMK GNLRVKLDVK YPSRLTPEQK SDLRRVLGGI S

Best Arabidopsis Sequence Match ( AT3G47940.1 )
(BLAST)

001: MGVDYYNILK VNHNATEDDL KKAYKRLAMI WHPDKNPSTR RDEAEAKFKR ISEAYDVLSD PQKRQIYDLY GEEGLKSGKI PNSSSSEASS SSSSSSSRYP
101: HFHQHRPQHP PNASSFRFNP RDAEDIYAEF FGSENGGGSN NAGGRGNRAF RNGHFNTGGA NGYSGEMRKV PAMENPLPVS LEDLYKGVVK KMRITRNVYD
201: ASGRMMVEAE ILPIEIKPGW KKGTKLTFPK KGNEEPGIIP ADIVFVVEEK PHPVYKRDGN DLLVSQEITL LEALTGKTVN LITLDGRTLM IPLTEIIKPD
301: HEIVVPNEGM PISKEPGKKG NLKLKLSVKY PSRLTSDQKF ELKRVLGGVS

Arabidopsis Description

DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9SU57]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.