Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083040 | Potato | cytosol | 98.22 | 98.22 |
| KRH63415 | Soybean | cytosol | 34.72 | 79.59 |
| VIT_17s0000g05530.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 72.4 | 69.91 |
| KRH54495 | Soybean | nucleus | 71.81 | 68.95 |
| Bra033783.1-P | Field mustard | cytosol | 65.58 | 68.0 |
| CDX83026 | Canola | cytosol | 65.58 | 67.38 |
| CDY36915 | Canola | cytosol | 66.47 | 67.07 |
| Bra018099.1-P | Field mustard | cytosol | 66.17 | 66.77 |
| Bra019519.1-P | Field mustard | cytosol | 65.58 | 66.57 |
| Solyc05g006820.2.1 | Tomato | plastid | 61.42 | 66.56 |
| CDX68447 | Canola | cytosol | 67.06 | 65.89 |
| Solyc04g005820.2.1 | Tomato | cytosol, nucleus | 61.72 | 65.0 |
| AT3G47940.1 | Thale cress | cytosol | 65.58 | 63.14 |
| CDY21803 | Canola | nucleus | 63.2 | 63.02 |
| CDY24146 | Canola | cytosol | 66.17 | 59.15 |
| KRH63417 | Soybean | nucleus | 35.61 | 59.11 |
| Solyc09g005350.2.1 | Tomato | nucleus, plastid | 58.46 | 57.94 |
| Solyc02g077670.2.1 | Tomato | cytosol | 56.68 | 55.69 |
| Solyc07g053620.2.1 | Tomato | nucleus | 33.83 | 50.89 |
| Solyc10g084300.1.1 | Tomato | nucleus | 38.87 | 49.62 |
| Solyc03g007650.1.1 | Tomato | cytosol, mitochondrion, nucleus | 37.98 | 46.89 |
| Solyc11g044450.1.1 | Tomato | nucleus | 31.75 | 31.1 |
| Solyc01g079610.2.1 | Tomato | nucleus | 31.45 | 30.72 |
| Solyc04g009770.2.1 | Tomato | nucleus | 35.61 | 28.71 |
| Solyc05g055160.2.1 | Tomato | nucleus | 35.61 | 28.64 |
| Solyc11g006460.1.1 | Tomato | nucleus | 35.01 | 28.16 |
| Solyc11g071830.1.1 | Tomato | plastid | 33.83 | 27.27 |
| Solyc01g090550.2.1 | Tomato | nucleus | 31.75 | 25.24 |
| Solyc01g105340.2.1 | Tomato | plastid | 25.52 | 24.36 |
| Solyc06g060240.1.1 | Tomato | cytosol | 27.6 | 24.22 |
| Solyc05g050810.2.1 | Tomato | nucleus | 17.8 | 23.35 |
| Solyc05g050820.2.1 | Tomato | cytosol | 13.65 | 19.33 |
| Solyc03g116790.2.1 | Tomato | plastid | 27.89 | 18.88 |
| Solyc01g086740.2.1 | Tomato | mitochondrion | 24.33 | 18.51 |
| Solyc01g081330.2.1 | Tomato | plastid | 22.26 | 17.28 |
| Solyc03g118500.2.1 | Tomato | plastid | 25.52 | 16.17 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:19.1.5.2 | Gene3D:2.60.260.20 | InterPro:DnaJ_C | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | UniProt:K4C8I4 |
| PFAM:PF00226 | PFAM:PF01556 | PRINTS:PR00625 | ScanProsite:PS00636 | PFscan:PS50076 | PANTHER:PTHR24078 |
| PANTHER:PTHR24078:SF524 | SMART:SM00271 | SUPFAM:SSF46565 | SUPFAM:SSF49493 | EnsemblPlantsGene:Solyc06g071110.2 | EnsemblPlants:Solyc06g071110.2.1 |
| UniParc:UPI0002766F10 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:43693783..43700719
Molecular Weight (calculated)
37693.0 Da
IEP (calculated)
9.771
GRAVY (calculated)
-0.708
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVDYYNILK VNRNASEEDL RKAYRRLAMI WHPDKNLGTN KYEAEAKFKQ ISEAYDVLSD PQKRQIYDLY GEEALKTGQV PPPPRGGPHN MRNPHPNPSF
101: RFNPRDADDI YAELFGASSS ENNGRARKTR DGFFRSTTNG GAEFSGAGNS STGGLRKAAP VENALLCRLE DLYKGAKKKM KISRTVLDSS GKLRTLEEIL
201: TIDIKPGWKK GTKVTFPEKG NEEPGVIPAD LVFVIEEKPH HVYVRDGNDL TVNQEISLLE ALTGKTLELT TLDGRNLIIP LTDIVKPGHE IIVPNEGMPI
301: SKEPRKKGNL RIKIDVKYPT RLTEAQKSDL RRVLGQG
101: RFNPRDADDI YAELFGASSS ENNGRARKTR DGFFRSTTNG GAEFSGAGNS STGGLRKAAP VENALLCRLE DLYKGAKKKM KISRTVLDSS GKLRTLEEIL
201: TIDIKPGWKK GTKVTFPEKG NEEPGVIPAD LVFVIEEKPH HVYVRDGNDL TVNQEISLLE ALTGKTLELT TLDGRNLIIP LTDIVKPGHE IIVPNEGMPI
301: SKEPRKKGNL RIKIDVKYPT RLTEAQKSDL RRVLGQG
001: MGVDYYNILK VNHNATEDDL KKAYKRLAMI WHPDKNPSTR RDEAEAKFKR ISEAYDVLSD PQKRQIYDLY GEEGLKSGKI PNSSSSEASS SSSSSSSRYP
101: HFHQHRPQHP PNASSFRFNP RDAEDIYAEF FGSENGGGSN NAGGRGNRAF RNGHFNTGGA NGYSGEMRKV PAMENPLPVS LEDLYKGVVK KMRITRNVYD
201: ASGRMMVEAE ILPIEIKPGW KKGTKLTFPK KGNEEPGIIP ADIVFVVEEK PHPVYKRDGN DLLVSQEITL LEALTGKTVN LITLDGRTLM IPLTEIIKPD
301: HEIVVPNEGM PISKEPGKKG NLKLKLSVKY PSRLTSDQKF ELKRVLGGVS
101: HFHQHRPQHP PNASSFRFNP RDAEDIYAEF FGSENGGGSN NAGGRGNRAF RNGHFNTGGA NGYSGEMRKV PAMENPLPVS LEDLYKGVVK KMRITRNVYD
201: ASGRMMVEAE ILPIEIKPGW KKGTKLTFPK KGNEEPGIIP ADIVFVVEEK PHPVYKRDGN DLLVSQEITL LEALTGKTVN LITLDGRTLM IPLTEIIKPD
301: HEIVVPNEGM PISKEPGKKG NLKLKLSVKY PSRLTSDQKF ELKRVLGGVS
Arabidopsis Description
DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9SU57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.