Factsheet for Solyc03g116790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g07210.t01	Wine grape	plastid	72.69	74.03
KRH09715	Soybean	nucleus, plastid	70.28	70.99
CDY58774	Canola	plastid	68.88	68.6
Bra035201.1-P	Field mustard	plastid	68.88	68.46
CDX87288	Canola	plastid	68.88	68.46
AT1G80030.2	Thale cress	plastid	68.27	68.0
KRH44477	Soybean	plastid	59.04	66.22
GSMUA_Achr11P...	Banana	plastid	64.06	65.1
KXG31305	Sorghum	plastid	64.86	64.99
KRH23590	Soybean	nucleus	46.59	64.99
Os02t0804500-01	Rice	plastid	63.05	64.48
TraesCS6A01G372700.1	Wheat	plastid	62.85	64.14
TraesCS6D01G356800.1	Wheat	plastid	62.45	63.99
TraesCS6B01G410600.1	Wheat	plastid	62.65	63.29
HORVU0Hr1G017450.8	Barley	cytosol	58.03	59.71
Zm00001d018413_P003	Maize	mitochondrion	64.46	56.41
Solyc01g105340.2.1	Tomato	plastid	37.75	53.26
Zm00001d052001_P002	Maize	plastid	63.05	51.14
Solyc03g118500.2.1	Tomato	plastid	37.95	35.53
Solyc01g086740.2.1	Tomato	mitochondrion	27.11	30.47
Solyc07g053620.2.1	Tomato	nucleus	13.65	30.36
Solyc05g006820.2.1	Tomato	plastid	18.27	29.26
Solyc02g077670.2.1	Tomato	cytosol	20.08	29.15
Solyc01g081330.2.1	Tomato	plastid	24.9	28.57
Solyc01g079610.2.1	Tomato	nucleus	19.68	28.41
Solyc09g005350.2.1	Tomato	nucleus, plastid	19.28	28.24
Solyc04g005820.2.1	Tomato	cytosol, nucleus	18.07	28.12
Solyc06g071110.2.1	Tomato	nucleus	18.88	27.89
Solyc05g055160.2.1	Tomato	nucleus	23.29	27.68
Solyc11g006460.1.1	Tomato	nucleus	23.29	27.68
Solyc11g071830.1.1	Tomato	plastid	22.49	26.79
Solyc01g090550.2.1	Tomato	nucleus	22.69	26.65
Solyc04g009770.2.1	Tomato	nucleus	22.29	26.55
Solyc05g050810.2.1	Tomato	nucleus	13.65	26.46
Solyc10g084300.1.1	Tomato	nucleus	11.24	21.21
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	11.45	20.88
Solyc11g044450.1.1	Tomato	nucleus	13.45	19.48
Solyc05g050820.2.1	Tomato	cytosol	7.83	16.39
Solyc06g060240.1.1	Tomato	cytosol	9.84	12.76

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0031072
GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4BLI1	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43096	PANTHER:PTHR43096:SF22	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938
EnsemblPlantsGene:Solyc03g116790.2	EnsemblPlants:Solyc03g116790.2.1	TIGRFAMs:TIGR02349	UniParc:UPI00027690FD	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:66061676..66072630

Molecular Weight (calculated)

53560.8 Da

IEP (calculated)

9.120

GRAVY (calculated)

-0.346

Length

498 amino acids

Sequence
(BLAST)

001: MNSTAMASTA SLSLRPSSLI SDRSHSPCLP PSSSSSFFSG GTRLWAHTKF ISISFSSSQK IPGRRFGRLV VAAAADYYST LGVPKSANSK DIKAAYRRLA
101: RQYHPDVNKE PNAPEKFKEI KDAYEILSDD KKRALYDQYG EAGVKSSVGA QAGAYTTNPF DLFETFFGPS MGGFGMDGAG FGTRRRSTVT KGEDLRYDMT
201: LEFSAAIFGA EKDFELSHLE TCEVCVGTGA KVGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSVCPNCGG DGEMISEYCR KCSGEGRIRV KKDIKVKIPP
301: GVNKGSILRV AGEGDAGPRG APPGDLYVYL DIEEIPEIQR DGINLISTVS VGYLDAILGA VVKVKTVDGL TDLQIPPGTQ PGDVLVLARK GAPKLNKPSI
401: RGDHLFTIKV SIPKRISVME RELLEELASL TKGSSTRTKT RPAVQQTAKV TETPVGSDSS AAKTDESSSE DRDDPLKKLA NFAGSVVNGA LKWLRDNL

Best Arabidopsis Sequence Match ( AT1G80030.1 )
(BLAST)

001: MAALASPSLI PSSLCFAAAA DGPRSLSSNF SAFSDGGSNF RYHKSFLSLS SSSSSSTPYR NRRGRSLVVF ATSGDYYATL GVSKSANNKE IKAAYRRLAR
101: QYHPDVNKEP GATEKFKEIS AAYEVLSDEQ KRALYDQYGE AGVKSTVGGA SGPYTSNPFD LFETFFGASM GGFPGMDQAD FGRTRRSRVT KGEDLRYDIT
201: LELSEAIFGS EKEFDLTHLE TCEACAGTGA KAGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSICPNCGG DGEVISENCR KCSGEGRVRI KKSIKVKIPP
301: GVSAGSILRV AGEGDSGPRG GPPGDLYVYL DVEDVRGIER DGINLLSTLS ISYLDAILGA VVKVKTVEGD TELQIPPGTQ PGDVLVLAKK GVPKLNRPSI
401: RGDHLFTVKV SVPNQISAGE RELLEELASL KDTSSNRSRT RAKPQQPSTL STAPSGSENK KDEVKEENEE PEQENYLWNN IKEFAGSVAN GALKWLRDNL

Arabidopsis Description

Molecular chaperone Hsp40/DnaJ family protein [Source:UniProtKB/TrEMBL;Acc:Q0WN54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.