Factsheet for Solyc05g050810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	52.14	35.17
Solyc01g090550.2.1	Tomato	nucleus	57.59	34.91
GSMUA_Achr8P11020_001	Banana	nucleus	53.7	34.5
Solyc05g055160.2.1	Tomato	nucleus	54.09	33.17
Solyc11g006460.1.1	Tomato	nucleus	53.31	32.7
Solyc04g009770.2.1	Tomato	nucleus	52.14	32.06
OQU82085	Sorghum	nucleus	51.36	31.58
Zm00001d017476_P001	Maize	plasma membrane	51.75	31.52
EES07516	Sorghum	nucleus	51.36	31.43
Os04t0549600-01	Rice	cytosol	49.42	30.53
Solyc07g053620.2.1	Tomato	nucleus	26.46	30.36
Os02t0656500-01	Rice	nucleus	49.42	30.24
TraesCS6D01G232600.1	Wheat	nucleus	49.81	30.12
TraesCS6B01G274600.1	Wheat	nucleus	49.81	30.12
TraesCS6A01G250800.1	Wheat	nucleus	49.81	30.12
Solyc11g071830.1.1	Tomato	plastid	48.25	29.67
HORVU0Hr1G018300.1	Barley	plastid	52.53	27.89
Solyc02g077670.2.1	Tomato	cytosol	27.63	20.7
Solyc09g005350.2.1	Tomato	nucleus, plastid	27.24	20.59
Solyc01g079610.2.1	Tomato	nucleus	27.63	20.58
Solyc05g006820.2.1	Tomato	plastid	24.12	19.94
Solyc04g005820.2.1	Tomato	cytosol, nucleus	22.96	18.44
Solyc06g071110.2.1	Tomato	nucleus	23.35	17.8
Solyc01g105340.2.1	Tomato	plastid	23.35	17.0
Solyc03g116790.2.1	Tomato	plastid	26.46	13.65
Solyc03g118500.2.1	Tomato	plastid	27.63	13.35
Solyc01g086740.2.1	Tomato	mitochondrion	22.96	13.32
Solyc01g081330.2.1	Tomato	plastid	19.46	11.52
Solyc11g044450.1.1	Tomato	nucleus	12.84	9.59
Solyc10g084300.1.1	Tomato	nucleus	9.34	9.09
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	9.34	8.79
Solyc06g060240.1.1	Tomato	cytosol	7.39	4.95
Solyc05g050820.2.1	Tomato	cytosol	1.95	2.1
HORVU0Hr1G016360.1	Barley	cytosol	0.39	0.56

Protein Annotations

Gene3D:1.10.287.110	Gene3D:2.60.260.20	MapMan:35.1	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4C1B3
PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR43888	PANTHER:PTHR43888:SF11
SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	EnsemblPlantsGene:Solyc05g050810.2	EnsemblPlants:Solyc05g050810.2.1
UniParc:UPI0002767237	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:60994786..60997622

Molecular Weight (calculated)

28275.5 Da

IEP (calculated)

9.426

GRAVY (calculated)

-0.643

Length

257 amino acids

Sequence
(BLAST)

001: MPHHSSCTSL YEAIGPHFDC SDNNNVPSDS TSGVAFGEGG CTHNTYPTSF LIAPSFKTSK SWLLIKLYIR MKVLRLSVMF EWGARRSDNS KYYEVLGVSN
101: NSSQNELKKA YRKSAIKNHP DKGGDPEKFK ELAQAYEVLS DPEKRELYDQ YGEDALKERM GGGSGGHNPF DIFESFFGGA FGGGGSRKKK GEDVVHTLRV
201: SLKDLYNGTT KKFSLSRNIL CPKCKGKGSK SGASGRCYGC QGTGMCVTTR QIVLKKD

Best Arabidopsis Sequence Match ( AT3G44110.1 )
(BLAST)

001: MFGRGPSKKS DNTKFYEILG VPKSASPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GGGPFGGNTS RQRRQRRGED VVHPLKVSLE DVYLGTMKKL SLSRNALCSK CNGKGSKSGA SLKCGGCQGS GMKVSIRQLG PGMIQQMQHA CNECKGTGET
201: INDRDRCPQC KGDKVIPEKK VLEVNVEKGM QHSQKITFEG QADEAPDTVT GDIVFVLQQK EHPKFKRKGE DLFVEHTLSL TEALCGFQFV LTHLDGRSLL
301: IKSNPGEVVK PDSYKAISDE GMPIYQRPFM KGKLYIHFTV EFPDSLSPDQ TKALEAVLPK PSTAQLSDME IDECEETTLH DVNIEDEMRR KAQAQREAYD
401: DDDEDDDHPG GAQRVQCAQQ

Arabidopsis Description

ATJ3DnaJ protein homolog atj3 [Source:UniProtKB/TrEMBL;Acc:Q0WW92]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.