Factsheet for Solyc01g105340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032760	Potato	plastid	97.45	77.3
TraesCS5A01G115000.1	Wheat	plastid	81.02	68.92
KRH59311	Soybean	plastid	79.6	64.9
GSMUA_Achr1P15780_001	Banana	plastid	81.59	64.72
GSMUA_Achr3P00920_001	Banana	mitochondrion	82.15	64.16
KRH43163	Soybean	plastid	79.32	64.07
Os05t0333500-01	Rice	mitochondrion, plastid	81.02	63.98
Os05t0334000-01	Rice	mitochondrion, plastid	81.02	63.98
Os05t0334400-01	Rice	mitochondrion, plastid	81.02	63.98
KRH31310	Soybean	nucleus, plastid	79.6	63.86
EES13204	Sorghum	plastid	80.74	63.62
KRG97564	Soybean	plastid	79.04	63.41
AT2G22360.1	Thale cress	plastid	79.32	63.35
CDX89453	Canola	plastid	80.74	63.05
Bra030245.1-P	Field mustard	plastid	80.74	63.05
CDY25588	Canola	plastid	80.74	62.78
VIT_00s0324g00040.t01	Wine grape	plastid	84.7	62.16
AT4G39960.1	Thale cress	mitochondrion, plastid	77.62	61.3
Zm00001d047195_P001	Maize	mitochondrion	56.37	60.3
TraesCS5B01G115900.1	Wheat	plastid	80.74	59.01
Zm00001d049583_P003	Maize	cytosol, mitochondrion, nucleus, plastid	81.02	57.78
Zm00001d024635_P001	Maize	mitochondrion	80.45	57.61
CDY63891	Canola	cytosol	76.49	55.56
GSMUA_Achr4P20410_001	Banana	cytosol	82.15	55.24
CDX69371	Canola	mitochondrion	76.2	53.69
TraesCS5D01G125500.1	Wheat	nucleus	80.45	52.79
Bra011820.1-P	Field mustard	cytosol	76.2	50.85
HORVU5Hr1G037600.2	Barley	cytosol, nucleus	80.74	48.89
Solyc03g116790.2.1	Tomato	plastid	53.26	37.75
Solyc01g086740.2.1	Tomato	mitochondrion	37.96	30.25
Solyc03g118500.2.1	Tomato	plastid	44.48	29.51
Solyc02g077670.2.1	Tomato	cytosol	27.2	27.99
Solyc09g005350.2.1	Tomato	nucleus, plastid	26.63	27.65
Solyc05g006820.2.1	Tomato	plastid	24.08	27.33
Solyc04g005820.2.1	Tomato	cytosol, nucleus	24.65	27.19
Solyc07g053620.2.1	Tomato	nucleus	17.0	26.79
Solyc01g079610.2.1	Tomato	nucleus	25.21	25.8
Solyc06g071110.2.1	Tomato	nucleus	24.36	25.52
Solyc05g055160.2.1	Tomato	nucleus	29.75	25.06
Solyc01g081330.2.1	Tomato	plastid	30.59	24.88
Solyc11g071830.1.1	Tomato	plastid	29.18	24.64
Solyc11g006460.1.1	Tomato	nucleus	29.18	24.58
Solyc04g009770.2.1	Tomato	nucleus	28.9	24.4
Solyc01g090550.2.1	Tomato	nucleus	28.33	23.58
Solyc05g050810.2.1	Tomato	nucleus	17.0	23.35
Solyc10g084300.1.1	Tomato	nucleus	14.16	18.94
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	13.88	17.95
Solyc11g044450.1.1	Tomato	nucleus	15.58	15.99
Solyc05g050820.2.1	Tomato	cytosol	9.35	13.87
Solyc06g060240.1.1	Tomato	cytosol	12.75	11.72

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4B2A4
HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096	PANTHER:PTHR43096:SF10	SMART:SM00271	SUPFAM:SSF46565
SUPFAM:SSF49493	SUPFAM:SSF57938	EnsemblPlantsGene:Solyc01g105340.2	EnsemblPlants:Solyc01g105340.2.1	TIGRFAMs:TIGR02349	UniParc:UPI0002768F7B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:93540788..93546319

Molecular Weight (calculated)

37667.1 Da

IEP (calculated)

9.064

GRAVY (calculated)

-0.474

Length

353 amino acids

Sequence
(BLAST)

001: MLANQKSKAV TYRKLARSYH PDVNKEPGAE QKFKEISNAY EVLSDDEKRS IYDKYGEAGL KGAGAGMGDF SNAFDLFESL FDGFGGMGGM GGMGGRGSRS
101: RATEGEDQGY NLVLNFKEAV FGVEKEIEIS RLETCGTCDG SGAKPGTKPS TCNTCGGQGQ VVSSARTPLG VFQQVTTCSS CGGTGEISTP CGTCNGDGRV
201: RKSKRISLKV PPGVDSGSRL RVRSEGNAGR RGGPPGDLFV MIEVLPDPVL KRDDTNILYN CKVSYIDAIL GTTMKVPTVD GMVDLKIPAG TQPGTTLVMA
301: KKGVPFLSKP NMRGDQLVRV QVEIPKRLSS EERKLIEELA NLNKPKAATN SKR

Best Arabidopsis Sequence Match ( AT2G22360.1 )
(BLAST)

001: MAIIQLGSTC VAQWSIRPQF AVRAYYPSRI ESTRHQNSSS QVNCLGASKS SMFSHGSLPF LSMTGMSRNM HPPRRGSRFT VRADADYYSV LGVSKNATKA
101: EIKSAYRKLA RNYHPDVNKD PGAEEKFKEI SNAYEVLSDD EKKSLYDRYG EAGLKGAAGF GNGDFSNPFD LFDSLFEGFG GGMGRGSRSR AVDGQDEYYT
201: LILNFKEAVF GMEKEIEISR LESCGTCEGS GAKPGTKPTK CTTCGGQGQV VSAARTPLGV FQQVMTCSSC NGTGEISTPC GTCSGDGRVR KTKRISLKVP
301: AGVDSGSRLR VRGEGNAGKR GGSPGDLFVV IEVIPDPILK RDDTNILYTC KISYIDAILG TTLKVPTVDG TVDLKVPAGT QPSTTLVMAK KGVPVLNKSN
401: MRGDQLVRVQ VEIPKRLSKE EKKLIEELAD MSKNKTANST SR

Arabidopsis Description

DJA6Chaperone protein dnaJ A6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJZ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.