Factsheet for TraesCS5D01G125500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G115900.1	Wheat	plastid	89.22	99.38
TraesCS5A01G115000.1	Wheat	plastid	74.16	96.14
HORVU5Hr1G037600.2	Barley	cytosol, nucleus	95.54	88.16
Os05t0334400-01	Rice	mitochondrion, plastid	72.12	86.8
Os05t0334000-01	Rice	mitochondrion, plastid	72.12	86.8
Os05t0333500-01	Rice	mitochondrion, plastid	72.12	86.8
EES13204	Sorghum	plastid	71.19	85.49
Solyc01g105340.2.1	Tomato	plastid	52.79	80.45
Zm00001d024635_P001	Maize	mitochondrion	71.19	77.69
Zm00001d049583_P003	Maize	cytosol, mitochondrion, nucleus, plastid	70.63	76.77
Zm00001d047195_P001	Maize	mitochondrion	47.03	76.67
GSMUA_Achr1P15780_001	Banana	plastid	61.52	74.38
GSMUA_Achr3P00920_001	Banana	mitochondrion	62.27	74.11
PGSC0003DMT400032760	Potato	plastid	58.55	70.79
KRH59311	Soybean	plastid	56.13	69.75
KRH43163	Soybean	plastid	56.13	69.11
KRH31310	Soybean	nucleus, plastid	55.95	68.41
KRG97564	Soybean	plastid	55.58	67.95
CDX89453	Canola	plastid	55.76	66.37
Bra030245.1-P	Field mustard	plastid	55.58	66.15
CDY25588	Canola	plastid	55.58	65.86
AT4G39960.1	Thale cress	mitochondrion, plastid	54.65	65.77
AT2G22360.1	Thale cress	plastid	53.72	65.38
VIT_00s0324g00040.t01	Wine grape	plastid	58.18	65.07
GSMUA_Achr4P20410_001	Banana	cytosol	61.71	63.24
CDY63891	Canola	cytosol	54.46	60.29
CDX69371	Canola	mitochondrion	54.09	58.08
Bra011820.1-P	Field mustard	cytosol	54.28	55.2
TraesCS6D01G356800.1	Wheat	plastid	38.85	43.0
TraesCS7D01G045900.2	Wheat	mitochondrion	25.84	34.84
TraesCS5D01G129700.1	Wheat	mitochondrion, plastid	25.09	32.07
TraesCS4D01G241300.2	Wheat	plastid	30.67	30.56
TraesCS7D01G293900.1	Wheat	cytosol	19.33	30.06
TraesCS3D01G168500.1	Wheat	cytosol	18.96	29.57
TraesCS1D01G107200.1	Wheat	nucleus	18.4	28.29
TraesCS1D01G403500.1	Wheat	cytosol	18.96	28.25
TraesCS5D01G382400.1	Wheat	plastid	21.38	27.32
TraesCS5D01G434100.1	Wheat	nucleus	21.19	27.08
TraesCS1D01G072800.1	Wheat	nucleus	17.29	27.03
TraesCS7D01G177900.1	Wheat	mitochondrion	23.98	26.93
TraesCS6D01G232600.1	Wheat	nucleus	20.07	25.41
TraesCS1D01G267500.1	Wheat	cytosol	12.45	20.24
TraesCS3D01G379400.1	Wheat	cytosol	11.52	19.08

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43096	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TIGRFAMs:TIGR02349
EnsemblPlantsGene:TraesCS5D01G125500	EnsemblPlants:TraesCS5D01G125500.1	TIGR:cd06257	TIGR:cd10719	TIGR:cd10747	SEG:seg

Description

No Description!

Coordinates

chr5D:+:192264834..192270039

Molecular Weight (calculated)

57535.5 Da

IEP (calculated)

10.266

GRAVY (calculated)

-0.511

Length

538 amino acids

Sequence
(BLAST)

001: MHGNARVRKK NSETEIRFGL AHPATISLAR CPPPSSQLAS PPYPTSPASP PPAAPMLHPV HRLPATPSRP AVHPHVSPAP PSLRLRRVAG TRPTTPVVCC
101: SGFVGSLPVA NQGSEFEPRS RSIYGGRGSV AIDPRFMASK NSTRGRGKHL ASPSASLNHA PSPRFRHRRG SRFIVRAESD FYSVLGVSRN ASKSEIKSAY
201: RKLARSYHPD VNKEPGAEQK FKDISNAYEV LSDDEKRAIY DKYGEAGLKG SGMGTGDYSN PFDLFESLFE GFGGMGGMGG GRAARNRPMQ GDDESYNLVL
301: NFKDAVFGVE KEIEITRLEG CNTCDGSGAK PGTKPTTCKT CGGQGQVVSS TRTPLGIFQQ VSTCNTCGGT GEFSTPCKTC GGDGRVRKTK RISLKVPAGV
401: DSGSRLRVRS EGNAGQRGGP PGDLYVFIDV LSDSVLKRDG TNILYTCKVS YIDAILGTTV KVPTVDGVVD LKIPSGTQPG TTLVMSKKGV PLLGKSNARG
501: DQLVRVQVEI PKRLSSDERK LIEELANLNK AEPANSRR

Best Arabidopsis Sequence Match ( AT2G22360.1 )
(BLAST)

001: MAIIQLGSTC VAQWSIRPQF AVRAYYPSRI ESTRHQNSSS QVNCLGASKS SMFSHGSLPF LSMTGMSRNM HPPRRGSRFT VRADADYYSV LGVSKNATKA
101: EIKSAYRKLA RNYHPDVNKD PGAEEKFKEI SNAYEVLSDD EKKSLYDRYG EAGLKGAAGF GNGDFSNPFD LFDSLFEGFG GGMGRGSRSR AVDGQDEYYT
201: LILNFKEAVF GMEKEIEISR LESCGTCEGS GAKPGTKPTK CTTCGGQGQV VSAARTPLGV FQQVMTCSSC NGTGEISTPC GTCSGDGRVR KTKRISLKVP
301: AGVDSGSRLR VRGEGNAGKR GGSPGDLFVV IEVIPDPILK RDDTNILYTC KISYIDAILG TTLKVPTVDG TVDLKVPAGT QPSTTLVMAK KGVPVLNKSN
401: MRGDQLVRVQ VEIPKRLSKE EKKLIEELAD MSKNKTANST SR

Arabidopsis Description

DJA6Chaperone protein dnaJ A6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJZ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.