Factsheet for TraesCS5D01G382400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 16595579

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G372900.1	Wheat	nucleus	99.76	99.76
TraesCS5B01G374900.1	Wheat	nucleus	99.76	99.76
HORVU5Hr1G092610.3	Barley	nucleus	99.05	98.82
TraesCS5D01G434100.1	Wheat	nucleus	84.32	84.32
AT3G44110.1	Thale cress	nucleus	81.95	82.14
CDY09117	Canola	nucleus	82.19	81.8
CDX92386	Canola	nucleus	81.95	81.75
Bra002385.1-P	Field mustard	nucleus	81.95	81.75
CDX92385	Canola	nucleus	81.71	81.52
AT5G22060.1	Thale cress	cytosol	81.0	81.38
Bra020169.1-P	Field mustard	nucleus	81.71	81.32
Bra002386.1-P	Field mustard	nucleus	81.47	81.28
CDY65546	Canola	nucleus	81.0	81.0
CDX88812	Canola	nucleus	74.82	77.21
Bra006608.1-P	Field mustard	nucleus	74.82	77.21
CDY16617	Canola	nucleus	37.53	75.96
CDX70980	Canola	nucleus	73.4	75.92
TraesCS6D01G232600.1	Wheat	nucleus	74.11	73.41
TraesCS1D01G107200.1	Wheat	nucleus	33.25	40.0
TraesCS3D01G168500.1	Wheat	cytosol	29.69	36.23
TraesCS7D01G293900.1	Wheat	cytosol	28.5	34.68
TraesCS1D01G072800.1	Wheat	nucleus	27.55	33.72
TraesCS1D01G403500.1	Wheat	cytosol	28.74	33.52
TraesCS7D01G045900.2	Wheat	mitochondrion	24.47	25.81
TraesCS3D01G379400.1	Wheat	cytosol	19.0	24.62
TraesCS6D01G356800.1	Wheat	plastid	27.79	24.07
TraesCS1D01G267500.1	Wheat	cytosol	18.29	23.26
TraesCS5D01G129700.1	Wheat	mitochondrion, plastid	22.8	22.8
TraesCS5D01G125500.1	Wheat	nucleus	27.32	21.38
TraesCS4D01G241300.2	Wheat	plastid	26.6	20.74
TraesCS7D01G177900.1	Wheat	mitochondrion	22.09	19.42

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938
EnsemblPlantsGene:TraesCS5D01G382400	EnsemblPlants:TraesCS5D01G382400.1	TIGR:cd06257	TIGR:cd10719	TIGR:cd10747	SEG:seg

Description

No Description!

Coordinates

chr5D:-:452217369..452221395

Molecular Weight (calculated)

46332.0 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.748

Length

421 amino acids

Sequence
(BLAST)

001: MFGRAPKKSD NTKYYEVLGV PKNAAQDDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGGGGGGV DPFDIFSSFF
101: GPSFGGGGGG SSRGRRQRRG EDVVHPLKAS LEDLYNGTSK KLSLSRSVLC SKCKGKGSKS GASMRCPGCQ GSGMKVTIRQ LGPSMIQQMQ QACNDCKGTG
201: ESINDKDRCP GCKGEKVLQE KKVLEVHVEK GMQHNQKITF PGEADEAPDT VTGDIVFVVQ QKEHPKFKRK GDDLFYEHTI SLTEALCGFQ LVLTHLDNRQ
301: LLIKSNPGEV VKPDSFKAIS DEGMPMYQRP FMKGKLYIHF TVEFPDSLAP DQCKALEAVL PPKPASKLTD MELDECEETT MHDVNMEEEM RRKAHAAAQE
401: AYDEDDEMPG GGAQRVQCAQ Q

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.