Factsheet for TraesCS5D01G129700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G117600.1	Wheat	plastid	96.91	96.91
TraesCS5B01G117900.1	Wheat	mitochondrion, plastid	95.49	95.49
HORVU5Hr1G036400.3	Barley	plastid	92.64	91.33
Os12t0168400-01	Rice	plastid	78.15	78.52
EES15725	Sorghum	mitochondrion, plastid	76.96	77.33
Zm00001d023537_P002	Maize	mitochondrion	74.11	73.41
KRH27511	Soybean	mitochondrion	56.53	53.72
KRH43470	Soybean	mitochondrion	56.06	53.15
TraesCS7D01G045900.2	Wheat	mitochondrion	50.12	52.88
KRH36456	Soybean	mitochondrion	55.58	52.82
KRH13903	Soybean	mitochondrion	55.58	52.7
VIT_13s0064g01360.t01	Wine grape	mitochondrion	55.58	51.88
Solyc01g086740.2.1	Tomato	mitochondrion	53.68	51.02
PGSC0003DMT400064990	Potato	mitochondrion	53.44	50.79
Bra020721.1-P	Field mustard	mitochondrion	50.83	47.87
CDY45921	Canola	mitochondrion	50.83	47.87
CDY35761	Canola	mitochondrion	50.83	47.87
AT5G48030.1	Thale cress	mitochondrion	50.83	46.93
CDY54516	Canola	mitochondrion	50.12	46.58
Bra037514.1-P	Field mustard	mitochondrion	49.88	46.46
CDX86330	Canola	mitochondrion	49.64	45.83
TraesCS7D01G177900.1	Wheat	mitochondrion	34.2	30.06
TraesCS1D01G107200.1	Wheat	nucleus	23.04	27.71
TraesCS6D01G356800.1	Wheat	plastid	29.45	25.51
TraesCS3D01G168500.1	Wheat	cytosol	20.9	25.51
TraesCS5D01G125500.1	Wheat	nucleus	32.07	25.09
TraesCS1D01G403500.1	Wheat	cytosol	21.38	24.93
TraesCS1D01G072800.1	Wheat	nucleus	19.48	23.84
TraesCS5D01G434100.1	Wheat	nucleus	23.75	23.75
TraesCS6D01G232600.1	Wheat	nucleus	23.52	23.29
TraesCS5D01G382400.1	Wheat	plastid	22.8	22.8
TraesCS4D01G241300.2	Wheat	plastid	28.98	22.59
TraesCS7D01G293900.1	Wheat	cytosol	18.53	22.54
TraesCS3D01G379400.1	Wheat	cytosol	14.73	19.08
TraesCS1D01G267500.1	Wheat	cytosol	14.96	19.03

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.3.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43096	PANTHER:PTHR43096:SF24	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938
EnsemblPlantsGene:TraesCS5D01G129700	EnsemblPlants:TraesCS5D01G129700.1	TIGR:cd06257	TIGR:cd10719	TIGR:cd10747	SEG:seg

Description

No Description!

Coordinates

chr5D:+:204275536..204293293

Molecular Weight (calculated)

45466.7 Da

IEP (calculated)

8.664

GRAVY (calculated)

-0.488

Length

421 amino acids

Sequence
(BLAST)

001: MARVAASRLA AVVTSSKSKL EVFSRHLPAA SSARGTPSRL LDPAKERRSP SWWCPSRSFH ATARVDARDY YDVLGVSSDA SASDIKKAYY GLAKKFHPDT
101: NKDDSGTEKK FQEVNRAYEV LKDDDKRGTY DQLGVEAYER LASGGGPDGS PDSGGDFAGD NPFGDIFTDI FDRGGQDVQI PVELSFMEAV QGCRKTITYE
201: ADVLCGTCNG SGVPPGTIPQ TCKACRGAGV TFIQRGMLSF ESTCSRCGGS GKIVKSFCKT CKGHQLVKGK KSVKLDIMAG IDDNETIKVR GQGGADVERN
301: KPGDLLLTIK VREDPIFRRE GNHVHVDAVL SMAQAVLGGT VTIPTLTGNV SVKVRQGTQQ GEKVVLRGKG IKAKNSSSYG NHYVHFNIRV PTELTPRQRE
401: LMEEFDKEES NDVARVAAAS G

Best Arabidopsis Sequence Match ( AT5G48030.1 )
(BLAST)

001: MVPSNGAKVL RLLSRRCLSS SLIQDLANQK LRGVCIGSYR RLNTSVGNHA NVIGDYASKS GHDRKWINFG GFNTNFGSTR SFHGTGSSFM SAKDYYSVLG
101: VSKNAQEGEI KKAYYGLAKK LHPDMNKDDP EAETKFQEVS KAYEILKDKE KRDLYDQVGH EAFEQNASGG FPNDQGFGGG GGGGFNPFDI FGSFNGDIFN
201: MYRQDIGGQD VKVLLDLSFM EAVQGCSKTV TFQTEMACNT CGGQGVPPGT KREKCKACNG SGMTSLRRGM LSIQTTCQKC GGAGQTFSSI CKSCRGARVV
301: RGQKSVKVTI DPGVDNSDTL KVARVGGADP EGDQPGDLYV TLKVREDPVF RREGSDIHVD AVLSVTQAIL GGTIQVPTLT GDVVVKVRPG TQPGHKVVLR
401: NKGIRARKST KFGDQYVHFN VSIPANITQR QRELLEEFSK AEQGEYEQRT ATGSSQ

Arabidopsis Description

GFA2GFA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UJR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.