CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023537_P002	Maize	mitochondrion	93.79	92.47
Os12t0168400-01	Rice	plastid	82.1	82.1
TraesCS5A01G117600.1	Wheat	plastid	78.04	77.67
HORVU5Hr1G036400.3	Barley	plastid	79.0	77.52
TraesCS5B01G117900.1	Wheat	mitochondrion, plastid	77.8	77.43
TraesCS5D01G129700.1	Wheat	mitochondrion, plastid	77.33	76.96
EER89093	Sorghum	mitochondrion, plastid	58.95	56.78
KRH27511	Soybean	mitochondrion	57.76	54.63
KRH43470	Soybean	mitochondrion	57.52	54.28
KRH13903	Soybean	mitochondrion	57.28	54.05
KRH36456	Soybean	mitochondrion	56.32	53.27
VIT_13s0064g01360.t01	Wine grape	mitochondrion	57.28	53.22
Solyc01g086740.2.1	Tomato	mitochondrion	55.85	52.82
PGSC0003DMT400064990	Potato	mitochondrion	55.37	52.37
Bra020721.1-P	Field mustard	mitochondrion	52.74	49.44
CDY35761	Canola	mitochondrion	52.74	49.44
CDY45921	Canola	mitochondrion	52.74	49.44
CDY54516	Canola	mitochondrion	52.98	49.01
Bra037514.1-P	Field mustard	mitochondrion	52.74	48.89
CDX86330	Canola	mitochondrion	52.74	48.46
AT5G48030.1	Thale cress	mitochondrion	52.51	48.25
KXG19604	Sorghum	mitochondrion	37.47	33.76
EES13204	Sorghum	plastid	32.94	30.8
KXG32445	Sorghum	endoplasmic reticulum	22.43	27.17
EES17752	Sorghum	endoplasmic reticulum, golgi	22.43	26.86
EES17644	Sorghum	cytosol	19.57	26.2
KXG31305	Sorghum	plastid	31.03	26.16
EES02163	Sorghum	cytosol	20.76	25.82
EES19943	Sorghum	cytosol	21.72	25.14
EES14600	Sorghum	cytosol	20.05	24.49
EES07516	Sorghum	nucleus	22.91	22.86
KXG37403	Sorghum	cytosol	22.67	22.73
EER93745	Sorghum	nucleus	22.43	22.43
KXG29372	Sorghum	cytosol	17.9	22.19
OQU82085	Sorghum	nucleus	21.72	21.77
OQU92981	Sorghum	plastid	27.92	21.71
EES13688	Sorghum	cytosol	18.14	21.41
EES01846	Sorghum	cytosol	14.8	18.84
EES19566	Sorghum	cytosol	14.08	17.35

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.3.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	EntrezGene:8076271	UniProt:C5YSM8
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlants:EES15725	ProteinID:EES15725
ProteinID:EES15725.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987
GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43096	PANTHER:PTHR43096:SF24	SMART:SM00271	EnsemblPlantsGene:SORBI_3008G051200	SUPFAM:SSF46565	SUPFAM:SSF49493
SUPFAM:SSF57938	unigene:Sbi.7943	UniParc:UPI0001A8865A	RefSeq:XP_002441887.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:5074589..5082451

Molecular Weight (calculated)

45646.9 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.506

Length

419 amino acids

Sequence
(BLAST)

001: MARAAASRLA AAASSSSTRE LFARHLAGAA ASAWTAPSRL PEPGRERRSP SWWCPSRSFH ATRRVYARDF YDVLGVSKDA SAPDIKKAYY ALAKKFHPDT
101: NKDDADAEKK FQEVNRAYEV LKDDDKREIY DQLGPEAYER QASGGDPGGP GFPQGNPFGD IFGDIFDNAY RGGQDVKVSV ELSFMEAVQG CRKTITYEAD
201: TFCGTCNGSG VPPGTVPKTC KTCRGSGVIY MQKGIFTVEC TCSLCNGSGK IVKNFCKTCK GEQVVKGKMS VKLDIAAGID DNDTMKVFGK GGADVERNKP
301: GDLYVTIKVR EDPIFRREGN HVHVDSVLSI AQAVLGGTVT VPTLTGNVTV KVRQGTQPGE KVVLRGKGIK ARNSPVFGNQ YVHFNIRVPT EVTQRQRELI
401: EEFDKEECTD REKLAAASG

Best Arabidopsis Sequence Match ( AT5G48030.1 )
(BLAST)

001: MVPSNGAKVL RLLSRRCLSS SLIQDLANQK LRGVCIGSYR RLNTSVGNHA NVIGDYASKS GHDRKWINFG GFNTNFGSTR SFHGTGSSFM SAKDYYSVLG
101: VSKNAQEGEI KKAYYGLAKK LHPDMNKDDP EAETKFQEVS KAYEILKDKE KRDLYDQVGH EAFEQNASGG FPNDQGFGGG GGGGFNPFDI FGSFNGDIFN
201: MYRQDIGGQD VKVLLDLSFM EAVQGCSKTV TFQTEMACNT CGGQGVPPGT KREKCKACNG SGMTSLRRGM LSIQTTCQKC GGAGQTFSSI CKSCRGARVV
301: RGQKSVKVTI DPGVDNSDTL KVARVGGADP EGDQPGDLYV TLKVREDPVF RREGSDIHVD AVLSVTQAIL GGTIQVPTLT GDVVVKVRPG TQPGHKVVLR
401: NKGIRARKST KFGDQYVHFN VSIPANITQR QRELLEEFSK AEQGEYEQRT ATGSSQ

Arabidopsis Description

GFA2GFA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UJR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.