CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0875700-01	Rice	cytosol	84.5	85.02
Zm00001d012242_P001	Maize	cytosol	79.33	82.59
TraesCS3A01G386400.1	Wheat	cytosol	79.64	81.88
TraesCS3D01G379400.1	Wheat	cytosol	80.55	81.54
TraesCS3B01G418500.1	Wheat	cytosol	79.94	80.92
HORVU3Hr1G081940.1	Barley	cytosol	79.03	80.25
Zm00001d042653_P001	Maize	plastid	87.54	72.0
TraesCS6A01G421300.1	Wheat	cytosol	45.59	71.09
GSMUA_Achr7P03030_001	Banana	cytosol	61.7	63.84
HORVU7Hr1G073040.2	Barley	cytosol	43.47	61.64
EES19566	Sorghum	cytosol	61.4	59.41
GSMUA_Achr8P32540_001	Banana	mitochondrion	34.04	40.29
Solyc11g044450.1.1	Tomato	nucleus	41.34	39.53
PGSC0003DMT400062759	Potato	cytosol	41.64	39.48
EES19943	Sorghum	cytosol	37.99	34.53
KRH10414	Soybean	cytosol	39.82	34.38
KRH44054	Soybean	cytosol	39.51	33.85
EES14600	Sorghum	cytosol	34.95	33.53
EES17644	Sorghum	cytosol	31.61	33.23
EES02163	Sorghum	cytosol	33.43	32.64
EES13688	Sorghum	cytosol	34.65	32.11
VIT_12s0034g02190.t01	Wine grape	nucleus	33.43	32.07
KXG29372	Sorghum	cytosol	31.91	31.07
KRH64663	Soybean	plastid	33.13	30.79
CDY66166	Canola	plastid	32.22	30.46
Bra036942.1-P	Field mustard	nucleus	31.31	29.51
CDY14974	Canola	nucleus	31.0	29.48
AT1G44160.1	Thale cress	mitochondrion	31.91	29.41
Solyc06g060240.1.1	Tomato	cytosol	34.04	29.17
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	33.74	28.83
CDY20589	Canola	nucleus	34.35	28.75
CDY20977	Canola	nucleus	34.95	28.54
Bra018413.1-P	Field mustard	nucleus	34.65	28.36
Bra032204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	31.0	28.18
CDX97927	Canola	nucleus	35.87	27.25
CDY67277	Canola	cytosol, nucleus, plastid	35.87	27.13
Bra019886.1-P	Field mustard	nucleus	35.56	27.02
AT1G11040.1	Thale cress	cytosol, nucleus, plastid	34.65	26.03
KRG90292	Soybean	cytosol, nucleus, plastid	22.49	25.87
KXG32445	Sorghum	endoplasmic reticulum	24.32	23.12
EES17752	Sorghum	endoplasmic reticulum, golgi	24.32	22.86
KXG37403	Sorghum	cytosol	25.23	19.86
EER93745	Sorghum	nucleus	25.23	19.81
EES07516	Sorghum	nucleus	25.23	19.76
OQU82085	Sorghum	nucleus	24.92	19.62
EER89093	Sorghum	mitochondrion, plastid	20.06	15.17
KXG19604	Sorghum	mitochondrion	21.28	15.05
EES15725	Sorghum	mitochondrion, plastid	18.84	14.8
EES13204	Sorghum	plastid	19.15	14.06
KXG31305	Sorghum	plastid	20.97	13.88
OQU92981	Sorghum	plastid	21.58	13.17

Protein Annotations

Gene3D:1.10.287.110	Gene3D:2.60.260.20	MapMan:35.1	EntrezGene:8063119	UniProt:C5XRC4	InterPro:DnaJ_C
InterPro:DnaJ_domain	EnsemblPlants:EES01846	ProteinID:EES01846	ProteinID:EES01846.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625
PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF517	SMART:SM00271	EnsemblPlantsGene:SORBI_3003G374200	SUPFAM:SSF46565
SUPFAM:SSF49493	UniParc:UPI0001A84FAC	RefSeq:XP_002456726.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:68939289..68941723

Molecular Weight (calculated)

35999.5 Da

IEP (calculated)

9.549

GRAVY (calculated)

-0.492

Length

329 amino acids

Sequence
(BLAST)

001: MGNPPELYHK ILNIPKDTSP QEIRAAYKNL VKKWHPDKHP PSSKPEAEAR FKAISEAYEA LLDQQENRAV FGLCNDGRAG ERAGGAFGGG GGLGAGVGPR
101: MERTRSDDFC TRSAPGTPAR EFKKVYSSGN TGGRRAFAEF SSSIMRKAPP LERKLECTLE ELCRGCKKEV KFTRDVVTKN GSIVKKEVTQ MVLVKPGWKK
201: GKQIVFEGMG DERPGCLPAD AVFTVSEKKH PTFKRVGNDL VLKAEVPLVS ALTGWSCSFR LLSGKKVSCA FHDEIICPGY EKVIAGEGMP IPEQKGARGD
301: LKVKFEIVFP KELTDEQRAG LAEILKGSC

Best Arabidopsis Sequence Match ( AT2G20560.1 )
(BLAST)

001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG

Arabidopsis Description

At2g20560/T13C7.15 [Source:UniProtKB/TrEMBL;Acc:Q9SIL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.