CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G39960.1	Thale cress	mitochondrion, plastid	87.04	94.63
CDX69371	Canola	mitochondrion	94.03	91.22
Bra011820.1-P	Field mustard	cytosol	93.83	86.2
CDY25588	Canola	plastid	77.57	83.04
CDX89453	Canola	plastid	76.95	82.74
Solyc01g105340.2.1	Tomato	plastid	55.56	76.49
KRH59311	Soybean	plastid	65.64	73.67
KRH31310	Soybean	nucleus, plastid	66.05	72.95
KRH43163	Soybean	plastid	65.43	72.77
KRG97564	Soybean	plastid	64.81	71.59
VIT_00s0324g00040.t01	Wine grape	plastid	70.16	70.89
PGSC0003DMT400032760	Potato	plastid	63.37	69.21
TraesCS5A01G115000.1	Wheat	plastid	58.85	68.92
EES13204	Sorghum	plastid	61.93	67.19
Os05t0333500-01	Rice	mitochondrion, plastid	61.73	67.11
Os05t0334000-01	Rice	mitochondrion, plastid	61.73	67.11
Os05t0334400-01	Rice	mitochondrion, plastid	61.73	67.11
GSMUA_Achr1P15780_001	Banana	plastid	61.11	66.74
GSMUA_Achr3P00920_001	Banana	mitochondrion	61.73	66.37
Zm00001d047195_P001	Maize	mitochondrion	42.18	62.12
Zm00001d024635_P001	Maize	mitochondrion	62.14	61.26
Zm00001d049583_P003	Maize	cytosol, mitochondrion, nucleus, plastid	61.93	60.81
TraesCS5B01G115900.1	Wheat	plastid	59.88	60.25
GSMUA_Achr4P20410_001	Banana	cytosol	63.58	58.86
TraesCS5D01G125500.1	Wheat	nucleus	60.29	54.46
HORVU5Hr1G037600.2	Barley	cytosol, nucleus	61.11	50.94
CDY58774	Canola	plastid	41.36	40.2
CDX87288	Canola	plastid	41.36	40.12
CDX92166	Canola	plastid	36.21	34.85
CDX95817	Canola	plastid	36.01	34.79
CDY35761	Canola	mitochondrion	29.01	31.54
CDY45921	Canola	mitochondrion	29.01	31.54
CDX97443	Canola	cytosol	19.14	30.9
CDX86330	Canola	mitochondrion	28.4	30.26
CDY54516	Canola	mitochondrion	28.19	30.24
CDY29908	Canola	cytoskeleton, cytosol, nucleus	19.75	29.91
CDY20944	Canola	cytosol	18.52	29.51
CDY65077	Canola	cytosol	20.37	29.46
CDY35188	Canola	cytosol	19.55	29.32
CDY13869	Canola	cytosol	20.37	29.29
CDX92876	Canola	cytoskeleton, cytosol, nucleus	19.14	29.25
CDY54902	Canola	cytosol	19.75	28.83
CDY05498	Canola	cytosol	19.75	28.83
CDY37986	Canola	cytosol	13.99	28.81
CDX67894	Canola	endoplasmic reticulum, golgi	19.34	28.75
CDY27963	Canola	cytosol	19.34	28.57
CDY64940	Canola	nucleus	18.93	28.05
CDX76646	Canola	golgi	19.96	28.03
CDY11430	Canola	golgi	19.96	28.03
CDY59898	Canola	endoplasmic reticulum, golgi	19.96	27.95
CDY58657	Canola	cytosol	18.72	27.91
CDY20637	Canola	cytosol	18.31	27.81
CDY38388	Canola	cytosol	19.55	27.78
CDY63310	Canola	endoplasmic reticulum	19.75	27.67
CDX89142	Canola	endoplasmic reticulum	19.75	27.67
CDY68815	Canola	cytoskeleton, cytosol, nucleus	18.72	27.25
CDY07893	Canola	cytosol	18.11	27.24
CDX88188	Canola	cytosol	17.9	27.1
CDX80523	Canola	cytosol	17.9	27.1
CDX83026	Canola	cytosol	17.9	26.52
CDY22173	Canola	cytosol	18.31	26.49
CDY36915	Canola	cytosol	17.9	26.05
CDY45143	Canola	cytoskeleton, cytosol, nucleus	17.7	25.98
CDY30900	Canola	cytoskeleton, cytosol, nucleus	17.9	25.82
CDX90134	Canola	mitochondrion	22.63	25.58
CDY65546	Canola	nucleus	22.02	25.42
CDX68447	Canola	cytosol	17.9	25.36
CDX92386	Canola	nucleus	22.02	25.36
CDX92385	Canola	nucleus	21.81	25.12
CDY09117	Canola	nucleus	21.81	25.06
CDX88812	Canola	nucleus	20.99	25.0
CDX70980	Canola	nucleus	20.37	24.32
CDY24146	Canola	cytosol	18.11	23.34
CDY21803	Canola	nucleus	16.05	23.08
CDY35719	Canola	mitochondrion	22.43	21.93
CDY14974	Canola	nucleus	11.32	15.9
CDY66166	Canola	plastid	11.32	15.8
CDY16617	Canola	nucleus	5.76	13.46
CDY20589	Canola	nucleus	10.49	12.98
CDY20977	Canola	nucleus	10.7	12.9
CDX97927	Canola	nucleus	10.91	12.24
CDY67277	Canola	cytosol, nucleus, plastid	10.7	11.95

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	GO:A0A078JC84	UniProt:A0A078JC84
EnsemblPlants:CDY63891	ProteinID:CDY63891	ProteinID:CDY63891.1	InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987
GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00039717001	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152
PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PFscan:PS51188	PANTHER:PTHR43096	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938
TIGRFAMs:TIGR02349	UniParc:UPI0004EDE4BF	SEG:seg	:	:	:

Description

BnaA01g34580DBnaA01g34580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC84]

Coordinates

chrLK034365:-:1058..5226

Molecular Weight (calculated)

52582.7 Da

IEP (calculated)

9.401

GRAVY (calculated)

-0.425

Length

486 amino acids

Sequence
(BLAST)

001: MSNFRESFSY LPHNSLSRFC SSLIPLRRHP FDNGECDMAL IQFGSSSCVA QWGIRRPHVA VKASYYPTRL ESHHDKSCIS QINCLGASQS SMFSHGSLPF
101: LSLVTGQSRN THSRRGARFT VRADTDFYSV LGVSKTATKA EIKSAYRKLA RSYHPDVNKD AGAEDKFKEI SNAYEILSDD EKRSLYDRYG EAGVKGAGMG
201: GMGDYSNPFD LFESLFEGMG GMGGGMGSRG GSRSRAVDGE DEYYSLILDF KEAVFGVEKE IEISRLESCG TCNGSGAKAG TKPTKCKTCG GQGQVVASTR
301: TPLGVFQQVM TCSPCNGTGE VSKPCGACSG DGRVRRTKRI SLKVPAGVDS GSRLRVRGEG NAGKRGGSSG DLFAVIEVIP DPILKRDDTN ILYTCKISYV
401: DAILGTTLKV PTVDGTVDLK VPAGTQPSTT LVMAKKGVPV LNKSKMRGDQ LVRVQVEIPK RLSKEEKKLV EELADMSKNK VANSRR

Best Arabidopsis Sequence Match ( AT4G39960.1 )
(BLAST)

001: MALIQFGSSC VAQWGILRPR FAVKAFYPSR LESHQDNCIS QINCLGASRS SMFAQGSLPF LSLTGVSPNT HSRRGARFTV RADTDFYSVL GVSKNATKAE
101: IKSAYRKLAR SYHPDVNKDA GAEDKFKEIS NAYEILSDDE KRSLYDRYGE AGVKGAGMGG MGDYSNPFDL FESLFEGMGG MGGMGGGMGS RGSRSRAIDG
201: EDEYYSLILN FKEAVFGIEK EIEISRLESC GTCNGSGAKA GTKPTKCKTC GGQGQVVAST RTPLGVFQQV MTCSPCNGTG EISKPCGACS GDGRVRRTKR
301: ISLKVPAGVD SGSRLRVRGE GNAGKRGGSP GDLFAVIEVI PDPVLKRDDT NILYTCKISY VDAILGTTLK VPTVDGEVDL KVPAGTQPST TLVMAKKGVP
401: VLNKSKMRGD QLVRVQVEIP KRLSKEEKML VEELADMSKN KVANSRR

Arabidopsis Description

AT4g39960/T5J17_130 [Source:UniProtKB/TrEMBL;Acc:Q940V1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.