CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92166	Canola	plastid	96.82	96.44
AT3G17830.1	Thale cress	plastid	83.9	81.62
VIT_17s0000g02030.t01	Wine grape	plastid	51.69	54.05
KRH48662	Soybean	nucleus, plastid	52.29	50.1
Solyc03g118500.2.1	Tomato	plastid	51.09	48.31
PGSC0003DMT400036786	Potato	plastid	50.89	48.12
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	48.11	44.4
TraesCS4B01G241700.1	Wheat	plastid	44.33	41.68
TraesCS4D01G241300.2	Wheat	plastid	43.34	40.37
Zm00001d028256_P002	Maize	plastid	42.94	40.15
OQU92981	Sorghum	plastid	42.94	40.07
CDX89453	Canola	plastid	35.98	40.04
TraesCS4A01G064300.2	Wheat	plastid	42.94	40.0
CDY25588	Canola	plastid	35.98	39.87
CDX87288	Canola	plastid	39.56	39.72
CDY58774	Canola	plastid	38.97	39.2
HORVU4Hr1G066920.5	Barley	mitochondrion	43.94	38.91
CDY63891	Canola	cytosol	34.79	36.01
CDX69371	Canola	mitochondrion	34.59	34.73
CDY37986	Canola	cytosol	13.72	29.24
CDY20944	Canola	cytosol	17.5	28.85
CDX92876	Canola	cytoskeleton, cytosol, nucleus	18.09	28.62
CDX97443	Canola	cytosol	17.1	28.57
CDY29908	Canola	cytoskeleton, cytosol, nucleus	18.09	28.35
CDY65077	Canola	cytosol	18.89	28.27
CDY05498	Canola	cytosol	18.49	27.93
CDY54902	Canola	cytosol	18.49	27.93
CDY13869	Canola	cytosol	18.69	27.81
CDX88188	Canola	cytosol	17.69	27.73
CDX80523	Canola	cytosol	17.69	27.73
CDX90134	Canola	mitochondrion	23.66	27.67
CDY20637	Canola	cytosol	17.5	27.5
CDY35188	Canola	cytosol	17.69	27.47
CDY35761	Canola	mitochondrion	24.06	27.07
CDY45921	Canola	mitochondrion	24.06	27.07
CDY07893	Canola	cytosol	17.3	26.93
CDY54516	Canola	mitochondrion	23.86	26.49
CDX86330	Canola	mitochondrion	23.86	26.32
CDY64940	Canola	nucleus	17.1	26.22
CDY27963	Canola	cytosol	17.1	26.14
CDY58657	Canola	cytosol	16.9	26.07
CDY30900	Canola	cytoskeleton, cytosol, nucleus	17.3	25.82
CDY68815	Canola	cytoskeleton, cytosol, nucleus	17.1	25.75
CDY38388	Canola	cytosol	17.5	25.73
CDY22173	Canola	cytosol	17.1	25.6
CDY45143	Canola	cytoskeleton, cytosol, nucleus	16.7	25.38
CDX83026	Canola	cytosol	16.3	25.0
CDX92386	Canola	nucleus	20.87	24.88
CDX70980	Canola	nucleus	20.08	24.82
CDX88812	Canola	nucleus	20.08	24.75
CDY65546	Canola	nucleus	20.68	24.7
CDX92385	Canola	nucleus	20.68	24.64
CDX76646	Canola	golgi	16.9	24.57
CDY11430	Canola	golgi	16.9	24.57
CDY36915	Canola	cytosol	16.3	24.55
CDX68447	Canola	cytosol	16.7	24.49
CDX67894	Canola	endoplasmic reticulum, golgi	15.9	24.46
CDY09117	Canola	nucleus	20.48	24.35
CDY59898	Canola	endoplasmic reticulum, golgi	16.3	23.63
CDY63310	Canola	endoplasmic reticulum	16.1	23.34
CDX89142	Canola	endoplasmic reticulum	16.1	23.34
CDY35719	Canola	mitochondrion	22.66	22.94
CDY21803	Canola	nucleus	15.11	22.49
CDY24146	Canola	cytosol	16.3	21.75
CDY16617	Canola	nucleus	6.56	15.87
CDY14974	Canola	nucleus	10.54	15.32
CDY66166	Canola	plastid	10.54	15.23
CDY20589	Canola	nucleus	11.13	14.25
CDY20977	Canola	nucleus	11.13	13.9
CDY67277	Canola	cytosol, nucleus, plastid	10.93	12.64
CDX97927	Canola	nucleus	10.74	12.47

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	GO:A0A078E3U5	EnsemblPlants:CDX95817
ProteinID:CDX95817	ProteinID:CDX95817.1	InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072
GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00101763001	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684
PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096
PANTHER:PTHR43096:SF26	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TIGRFAMs:TIGR02349
TMHMM:TMhelix	UniParc:UPI0004EE5F0A	SEG:seg	:	:	:

Description

BnaC05g35680D

Coordinates

chrLK031891:-:483148..485751

Molecular Weight (calculated)

55743.5 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.598

Length

503 amino acids

Sequence
(BLAST)

001: MARSTLIPSI NPAHSFRHQF PLSNPSFSSP PSFLRCGNRR RGVTMAAGKD HYKTLNVGRN ATLKEIKSAY RALARKYHPD MNKNPGAEDK FKQISAAYEV
101: LSDEEKRSAY DRFGEAGLDG NFNASQDASQ GVDPFDLYSA FFGGGSDGFF GEMGDSGGMG FDFMNKRSLD LDIRYDMRLS FEESVFGVKR EIDVSYLATC
201: DGCGGTGAKS SKDVKQCSNC GGKGRVMDTQ RTPFGIMSQV STCSKCGGDG KIITDKCRMC NGNGRLRSSK KMDLVVPPGV SDRATMRMRG EGNVDKRSGR
301: AGDLFIVLQV AEKRGIRREG LNLYSKITID FTDAILGTVT KVETVEGTMN LRIPPGTQPG DTVKLYRKGV PDTDRPSVRG DHCFEVKVLI PKNLSERERK
401: LVEEFSSLRR SSSSTETRQE EHRFDSESRE KPSLWHKMKS FIRPEEDSRT KFGTMSLNSS VPLRRMNEAG TSIVFPFLAL CVIASAVALV QKKGNRLKEK
501: KEI

Best Arabidopsis Sequence Match ( AT3G17830.1 )
(BLAST)

001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET

Arabidopsis Description

At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.