Factsheet for TraesCS4A01G064300.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G241300.2	Wheat	plastid	91.67	91.67
TraesCS4B01G241700.1	Wheat	plastid	90.0	90.84
HORVU4Hr1G066920.5	Barley	mitochondrion	92.41	87.85
OQU92981	Sorghum	plastid	67.78	67.9
Zm00001d028256_P002	Maize	plastid	67.41	67.66
VIT_17s0000g02030.t01	Wine grape	plastid	42.96	48.23
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	46.11	45.69
Bra022249.1-P	Field mustard	cytosol, mitochondrion, plastid	38.52	45.41
KRH48662	Soybean	nucleus, plastid	43.15	44.38
Solyc03g118500.2.1	Tomato	plastid	42.41	43.05
CDX95817	Canola	plastid	40.0	42.94
PGSC0003DMT400036786	Potato	plastid	42.04	42.67
CDX92166	Canola	plastid	39.63	42.38
AT3G17830.1	Thale cress	plastid	40.37	42.17
TraesCS5A01G115000.1	Wheat	plastid	29.81	38.8
TraesCS6A01G372700.1	Wheat	plastid	33.89	37.5
TraesCS7A01G298000.1	Wheat	cytosol	19.07	29.77
TraesCS5A01G117600.1	Wheat	plastid	22.78	29.22
TraesCS7A01G051000.1	Wheat	mitochondrion	23.15	28.47
TraesCS3A01G520100.1	Wheat	cytosol	13.7	27.72
TraesCS1A01G099300.1	Wheat	nucleus	17.78	27.43
TraesCS1A01G395300.1	Wheat	cytosol	18.52	26.88
TraesCS6A01G250800.1	Wheat	nucleus	20.93	26.59
TraesCS5A01G426100.1	Wheat	nucleus	20.56	26.37
TraesCS1A01G070300.1	Wheat	cytosol	16.48	26.25
TraesCS3A01G161200.1	Wheat	nucleus	16.48	25.8
TraesCS5A01G372900.1	Wheat	nucleus	20.0	25.65
TraesCS6A01G087000.1	Wheat	cytosol	15.56	24.93
TraesCS7A01G176600.1	Wheat	mitochondrion	20.56	23.32
TraesCS1A01G267600.1	Wheat	cytosol	12.04	19.88
TraesCS3A01G386400.1	Wheat	cytosol	11.67	19.69
TraesCS6A01G421300.1	Wheat	cytosol	6.85	17.54

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43096	PANTHER:PTHR43096:SF26	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938
EnsemblPlantsGene:TraesCS4A01G064300	EnsemblPlants:TraesCS4A01G064300.2	TIGR:cd06257	TIGR:cd10719	TIGR:cd10747	SEG:seg

Description

No Description!

Coordinates

chr4A:-:60934557..60940092

Molecular Weight (calculated)

59302.0 Da

IEP (calculated)

9.036

GRAVY (calculated)

-0.583

Length

540 amino acids

Sequence
(BLAST)

001: MAAALYLPAN PNPPPNPTST LRQPLPRPST SGELHFRPRL VPRRARARTH LPAAFGRRPP AAAAAERGGK DYYATLNVRR DATMKEVKSA YRTLARKYHP
101: DMNKSPGAEE KFKEISAAYE VLSDKEKRSL YDRFGETGLH ADYGGGDFSA HGVDPYELFN AFFGSSNKFF GDSMGPGRFH YSSNVNDNRG LDIRYDLLLP
201: FEESILGGKR EISISRHETC GACHGSGAKS SDSITECTQC RGQGRSMKSQ RTPFGIVSQI SSCLNCDGSG KIITDHCASC YGSGKVQVER SIEVDIPGGI
301: EDGSAVRLTG GGSVDKQRGV SGDLYIFVRV EEKQGIHREG LNLCSDVTID YTDAILGTTV KVETIEGLKD LYIPPGTQPG EKLKFAQLGA PDIKRPNHRG
401: DHNFVIKVKI PRNISDQARS LVQDLAALKG TQGISVPSDE TIDQGNLRDG SHHSSARKKT SFWGSVRNLF RADEGDQRFA SISAQPVIPR WTYQRGVHRA
501: APLLEGCFMI AALIFVMSRR DKFRFCPKGD DRTTKPEDGE

Best Arabidopsis Sequence Match ( AT3G17830.1 )
(BLAST)

001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET

Arabidopsis Description

At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.