Factsheet for VIT_17s0000g02030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48662	Soybean	nucleus, plastid	61.95	56.76
Bra022249.1-P	Field mustard	cytosol, mitochondrion, plastid	52.6	55.24
PGSC0003DMT400036786	Potato	plastid	59.67	53.95
Solyc03g118500.2.1	Tomato	plastid	59.46	53.76
CDX95817	Canola	plastid	54.05	51.69
CDX92166	Canola	plastid	54.26	51.68
AT3G17830.1	Thale cress	plastid	54.47	50.68
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	55.3	48.81
TraesCS4B01G241700.1	Wheat	plastid	48.23	43.36
TraesCS4A01G064300.2	Wheat	plastid	48.23	42.96
Zm00001d028256_P002	Maize	plastid	48.02	42.94
OQU92981	Sorghum	plastid	47.82	42.67
TraesCS4D01G241300.2	Wheat	plastid	47.82	42.59
HORVU4Hr1G066920.5	Barley	mitochondrion	49.27	41.73
VIT_09s0002g07210.t01	Wine grape	plastid	41.16	40.49
VIT_00s0324g00040.t01	Wine grape	plastid	35.97	35.97
VIT_01s0026g01450.t01	Wine grape	cytosol	17.26	30.4
VIT_04s0008g04300.t01	Wine grape	cytosol	20.17	28.61
VIT_13s0064g01360.t01	Wine grape	mitochondrion	26.4	28.16
VIT_18s0001g06970.t01	Wine grape	endoplasmic reticulum, extracellular	19.96	27.67
VIT_06s0080g01230.t01	Wine grape	cytosol	23.91	27.58
VIT_10s0003g00260.t01	Wine grape	cytosol	19.54	27.49
VIT_08s0105g00350.t01	Wine grape	cytosol	18.71	26.63
VIT_13s0073g00560.t01	Wine grape	cytosol	22.66	26.2
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	17.88	24.93
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	17.88	24.64
VIT_15s0021g02090.t01	Wine grape	cytosol	22.66	24.61
VIT_12s0034g02190.t01	Wine grape	nucleus	10.39	14.58

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	ProteinID:CCB43296	ProteinID:CCB43296.1
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	UniProt:F6GSP1	EMBL:FN594950
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150
GO:GO:0009408	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072
GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684
PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096
PANTHER:PTHR43096:SF26	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TIGRFAMs:TIGR02349
UniParc:UPI00021094D4	ArrayExpress:VIT_17s0000g02030	EnsemblPlantsGene:VIT_17s0000g02030	EnsemblPlants:VIT_17s0000g02030.t01	SEG:seg	:

Description

No Description!

Coordinates

chr17:-:1644223..1656845

Molecular Weight (calculated)

53142.0 Da

IEP (calculated)

9.189

GRAVY (calculated)

-0.561

Length

481 amino acids

Sequence
(BLAST)

001: MLAFLPISKS PLISNSALPF NTFRLRPPKW RRWGVIRAAR SDYYSTLNVS RNSTLKEIKS SYRKLARKYH PDLNKSPGAE EKFKEISAAY EVLSDDEKRS
101: LYDRFGEAGL EGEYDRSNGG SKGVDPFDFF DAFFDESNGP FGRWGEPGGM NFNSRSKGNQ GLDVRYDLFL SFEESIFGKQ EEIEVSCFEV CDNCGGTGAK
201: SSSCIKTCTN CGGKGGVMKT QKTPFGIMSQ VSTCSKCGGD GKIITSHCQS CGGHGKVQSK QSIEVIIPPG VSDGATMQVR GKGNFDKKRG MAGDLYLVLH
301: VNEKHGIWRD GLNLYSKVNV DYTEAILGTV KKVETVEGLR DLQIPSGTQP GDSVKLSYMG VPDINRPSRR GDHNFVVNVL IPKDISDTER ILVEKLASMR
401: TTCNDQPVSS EGPAKDQKHH ASPKRSEHAP SMWKSIKNFL WRNPSRTSFA SVSVDTSTLL QRCSRPDSSL MISLLTKIQG K

Best Arabidopsis Sequence Match ( AT3G17830.1 )
(BLAST)

001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET

Arabidopsis Description

At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.