Factsheet for VIT_17s0000g05530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63415	Soybean	cytosol	33.81	80.27
KRH54495	Soybean	nucleus	73.35	72.93
PGSC0003DMT400083040	Potato	cytosol	70.2	72.7
Solyc06g071110.2.1	Tomato	nucleus	69.91	72.4
Bra033783.1-P	Field mustard	cytosol	65.62	70.46
CDX83026	Canola	cytosol	66.19	70.43
Bra019519.1-P	Field mustard	cytosol	65.9	69.28
CDY36915	Canola	cytosol	66.19	69.16
Bra018099.1-P	Field mustard	cytosol	65.9	68.86
CDX68447	Canola	cytosol	66.76	67.93
CDY21803	Canola	nucleus	63.9	65.98
KRH63417	Soybean	nucleus	37.82	65.02
AT3G47940.1	Thale cress	cytosol	64.47	64.29
VIT_01s0026g01450.t01	Wine grape	cytosol	49.28	63.0
VIT_08s0105g00350.t01	Wine grape	cytosol	58.74	60.65
CDY24146	Canola	cytosol	65.33	60.48
VIT_10s0003g00260.t01	Wine grape	cytosol	58.74	59.94
VIT_04s0008g04300.t01	Wine grape	cytosol	53.01	54.57
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	31.23	31.59
VIT_13s0073g00560.t01	Wine grape	cytosol	34.67	29.09
VIT_06s0080g01230.t01	Wine grape	cytosol	34.67	29.02
VIT_12s0034g02190.t01	Wine grape	nucleus	27.79	28.28
VIT_15s0021g02090.t01	Wine grape	cytosol	34.1	26.86
VIT_09s0002g07210.t01	Wine grape	plastid	28.08	20.04
VIT_13s0064g01360.t01	Wine grape	mitochondrion	24.93	19.29
VIT_00s0324g00040.t01	Wine grape	plastid	26.36	19.13
VIT_17s0000g02030.t01	Wine grape	plastid	24.64	17.88
VIT_18s0001g06970.t01	Wine grape	endoplasmic reticulum, extracellular	17.77	17.87

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100246709	wikigene:100246709	MapMan:19.1.5.2	Gene3D:2.60.260.20	ProteinID:CCB43122
ProteinID:CCB43122.1	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	UniProt:F6GTB3	EMBL:FN594950
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100246709
wikigene:LOC100246709	PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PANTHER:PTHR24078	PANTHER:PTHR24078:SF524	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	TIGR:TC67143
UniParc:UPI0002109FF9	ArrayExpress:VIT_17s0000g05530	EnsemblPlantsGene:VIT_17s0000g05530	EnsemblPlants:VIT_17s0000g05530.t01	unigene:Vvi.19576	RefSeq:XP_002270193
RefSeq:XP_002270193.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:6022005..6029405

Molecular Weight (calculated)

39032.4 Da

IEP (calculated)

9.228

GRAVY (calculated)

-0.722

Length

349 amino acids

Sequence
(BLAST)

001: MPAHLIMEKE MGVDYYNILK VNRNASEDDL RRAYRRLAMI WHPDKNPSNK REAEAKFKQI SEAYDVLSDP QKRQIYDLYG EEALKSGQVP PPPASTRGGP
101: QHHNHHPNPS FRFNPRDADD IYEEFFGPDG SGTGAGGGGG GRNRVYKDGF FRTSNGDYGS QALRKAAPVE NLLPCSLEEL YKGAKKKMKI SRTISDAFGY
201: GKIRTVEEIL SIDIKPGWKK GTKITFPEKG NQEPGVIPAD LIFVVDEKPH LVFKRDGNDL IVDREITLLE ALTGKALELK TLDGRSLEIQ LTDIVKPGYE
301: MVVPNEGMPI SKEPSRKGNL RIKFDVNYPS RLTSEQKSDL KRVLGGSSS

Best Arabidopsis Sequence Match ( AT3G47940.1 )
(BLAST)

001: MGVDYYNILK VNHNATEDDL KKAYKRLAMI WHPDKNPSTR RDEAEAKFKR ISEAYDVLSD PQKRQIYDLY GEEGLKSGKI PNSSSSEASS SSSSSSSRYP
101: HFHQHRPQHP PNASSFRFNP RDAEDIYAEF FGSENGGGSN NAGGRGNRAF RNGHFNTGGA NGYSGEMRKV PAMENPLPVS LEDLYKGVVK KMRITRNVYD
201: ASGRMMVEAE ILPIEIKPGW KKGTKLTFPK KGNEEPGIIP ADIVFVVEEK PHPVYKRDGN DLLVSQEITL LEALTGKTVN LITLDGRTLM IPLTEIIKPD
301: HEIVVPNEGM PISKEPGKKG NLKLKLSVKY PSRLTSDQKF ELKRVLGGVS

Arabidopsis Description

DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9SU57]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.