Factsheet for VIT_04s0008g04300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	68.73	77.93
PGSC0003DMT400083824	Potato	cytosol	72.27	75.62
KRH52529	Soybean	cytosol	71.39	74.23
KRH61858	Soybean	cytosol	30.97	73.94
KRH61857	Soybean	cytosol, nucleus	25.07	73.28
CDY05498	Canola	cytosol	71.98	73.27
Bra020505.1-P	Field mustard	cytosol	71.98	73.27
CDY54902	Canola	cytosol	71.68	72.97
CDX80523	Canola	cytosol	69.03	72.9
CDX88188	Canola	cytosol	69.03	72.9
Bra009848.1-P	Field mustard	cytosol	67.55	72.47
AT5G25530.1	Thale cress	cytosol	71.98	70.32
EES14600	Sorghum	cytosol	68.14	67.35
Zm00001d024527_P001	Maize	cytosol	68.73	66.95
Os08t0161900-01	Rice	cytosol	66.67	66.08
TraesCS7D01G293900.1	Wheat	cytosol	66.67	65.32
HORVU7Hr1G070170.1	Barley	cytosol	66.67	65.32
TraesCS7B01G188900.2	Wheat	cytosol	66.67	65.32
TraesCS7A01G298000.1	Wheat	cytosol	66.67	65.32
GSMUA_Achr4P12330_001	Banana	nucleus	62.54	64.63
GSMUA_Achr9P23300_001	Banana	cytosol	64.6	63.66
VIT_10s0003g00260.t01	Wine grape	cytosol	61.36	60.82
GSMUA_AchrUn_...	Banana	cytosol	56.64	59.44
VIT_08s0105g00350.t01	Wine grape	cytosol	59.0	59.17
TraesCS3A01G520100.1	Wheat	cytosol	44.54	56.55
TraesCSU01G059600.1	Wheat	cytosol	51.92	55.17
TraesCS3B01G587800.1	Wheat	cytosol	51.62	54.18
VIT_01s0026g01450.t01	Wine grape	cytosol	43.07	53.48
Zm00001d032347_P001	Maize	cytosol	53.39	53.08
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	54.57	53.01
EES13688	Sorghum	cytosol	55.46	52.96
Os02t0128400-01	Rice	cytosol	51.92	51.92
KXG29372	Sorghum	cytosol	51.03	51.18
TraesCS6B01G115000.1	Wheat	cytosol	50.15	50.45
TraesCS6A01G087000.1	Wheat	cytosol	49.85	50.15
HORVU6Hr1G016170.1	Barley	cytosol	49.85	50.15
TraesCSU01G019500.1	Wheat	nucleus	49.85	50.15
HORVU6Hr1G016080.3	Barley	cytosol	49.85	49.42
HORVU3Hr1G113710.2	Barley	plastid	43.66	43.66
Os08t0374400-00	Rice	plastid	47.79	41.65
Zm00001d053972_P001	Maize	cytosol, golgi, plasma membrane	51.62	41.27
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	32.15	31.59
VIT_06s0080g01230.t01	Wine grape	cytosol	38.05	30.94
VIT_13s0073g00560.t01	Wine grape	cytosol	36.58	29.81
VIT_12s0034g02190.t01	Wine grape	nucleus	27.43	27.11
VIT_15s0021g02090.t01	Wine grape	cytosol	34.22	26.19
VIT_09s0002g07210.t01	Wine grape	plastid	30.68	21.27
VIT_00s0324g00040.t01	Wine grape	plastid	30.09	21.21
VIT_17s0000g02030.t01	Wine grape	plastid	28.61	20.17
VIT_13s0064g01360.t01	Wine grape	mitochondrion	25.37	19.07
VIT_18s0001g06970.t01	Wine grape	endoplasmic reticulum, extracellular	17.99	17.58

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100268033	wikigene:100268033	MapMan:19.1.5.2	Gene3D:2.20.25.170	Gene3D:2.60.260.20
ProteinID:CBI20934	ProteinID:CBI20934.3	UniProt:D7SUI5	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
EntrezGene:LOC100268033	wikigene:LOC100268033	PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF435	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493
UniParc:UPI00015C8C9E	ArrayExpress:VIT_04s0008g04300	EnsemblPlantsGene:VIT_04s0008g04300	EnsemblPlants:VIT_04s0008g04300.t01	RefSeq:XP_002284572	RefSeq:XP_002284572.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:3680859..3684659

Molecular Weight (calculated)

37060.1 Da

IEP (calculated)

9.334

GRAVY (calculated)

-0.539

Length

339 amino acids

Sequence
(BLAST)

001: MGVDYYNVLK VGKNATDEDL KKSYRRLAMK WHPDKNPNNK KEAEAKFKQI SEAYEVLSDP QKKVVYDQHG EEGLKDMPPP GSGGGFPFGS GDANGFFPRN
101: AEDIFAEFFG SNPFGFGSAA HGRSMRFQSE GGGTFGGFGG GESAFRSYTE GTGGSVRLRK PPPVENKLPC TLAELYTGST RKMKISRTVV DANGRLVPET
201: EILIIEVKPG WKKGTKVTFQ DKGNEQLNQL AADLVFVIDE KPDNVFKRDG NDLVMNYKVS LAEALAGTAV TLTTLDGRNL TIPVTDIVSP GYELVVAKEG
301: MPIVKEPGNR GDLRIKFEVK FPTRLTPEQR AGLRRALGG

Best Arabidopsis Sequence Match ( AT5G25530.2 )
(BLAST)

001: MGLDYYDILK VNRNATEDDL KKSYRKLAMK WHPDKNPNTK TEAEAKFKQI SEAYEVLSDP QKRAVYDQYG EEGLSDMPPP GSTGNNGRAG GFNPRNAEDI
101: FAEFFGSSPF GFGSAGGPGR SMRFQSDGGG GMFGGFGGGN NGSENNIFRT YSEGTPAPKK PPPVESKLPC SLEELYSGST RKMKISRSIV DANGRQAQET
201: EILTIVVKPG WKKGTKIKFP DKGNEQVNQL PADLVFVIDE KPHDLFTRDG NDLITSRRVT LAEAIGGTTV NINTLDGRNL PVGVAEIVSP GYEFVVPGEG
301: MPIAKEPRNK GDLKIKFDVQ FPARLTTEQK SALKRVLAG

Arabidopsis Description

DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:F4JY55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.