Factsheet for VIT_06s0080g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44110.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0073g00560.t01	Wine grape	cytosol	92.09	92.31
PGSC0003DMT400060145	Potato	cytosol	91.37	90.93
Solyc05g055160.2.1	Tomato	nucleus	91.37	90.93
KRH25334	Soybean	nucleus	89.93	89.93
GSMUA_Achr4P31390_001	Banana	cytosol	89.69	89.9
KRG88903	Soybean	nucleus	89.69	89.69
PGSC0003DMT400005019	Potato	cytosol	89.93	89.5
KXG37403	Sorghum	cytosol	89.21	89.0
GSMUA_Achr4P22790_001	Banana	cytosol	89.21	89.0
Solyc11g006460.1.1	Tomato	nucleus	89.21	88.78
KRH22611	Soybean	nucleus	88.73	88.73
KRH26709	Soybean	nucleus	88.73	88.73
EER93745	Sorghum	nucleus	88.97	88.54
Zm00001d034368_P001	Maize	extracellular, plasma membrane	88.73	88.52
GSMUA_Achr9P25940_001	Banana	nucleus	88.01	88.01
GSMUA_Achr6P29960_001	Banana	nucleus	87.29	87.92
Zm00001d033210_P002	Maize	nucleus	88.25	87.83
Solyc04g009770.2.1	Tomato	nucleus	87.77	87.56
Zm00001d013111_P001	Maize	extracellular, plasma membrane	87.53	87.53
Os03t0787300-01	Rice	plasma membrane	87.53	87.53
Os03t0648400-02	Rice	nucleus	87.29	87.29
PGSC0003DMT400065401	Potato	nucleus	86.81	86.4
GSMUA_Achr7P01290_001	Banana	nucleus	86.09	86.09
TraesCS5B01G428000.1	Wheat	nucleus	85.61	84.8
TraesCS5D01G434100.1	Wheat	nucleus	85.61	84.8
TraesCS5A01G426100.1	Wheat	nucleus	85.37	84.56
HORVU5Hr1G103680.1	Barley	cytosol	85.37	84.56
AT3G44110.1	Thale cress	nucleus	84.89	84.29
PGSC0003DMT400007728	Potato	nucleus	84.65	84.25
Solyc11g071830.1.1	Tomato	plastid	83.21	83.01
CDX92386	Canola	nucleus	83.93	82.94
Bra002385.1-P	Field mustard	nucleus	83.93	82.94
CDY09117	Canola	nucleus	83.93	82.74
CDX92385	Canola	nucleus	83.69	82.7
Bra002386.1-P	Field mustard	nucleus	83.45	82.46
CDY65546	Canola	nucleus	83.21	82.42
Bra020169.1-P	Field mustard	nucleus	83.45	82.27
Zm00001d013669_P002	Maize	cytosol	88.01	81.74
AT5G22060.1	Thale cress	cytosol	81.53	81.15
Zm00001d006666_P001	Maize	nucleus	56.12	79.86
Zm00001d048538_P001	Maize	nucleus	61.63	79.08
Bra006608.1-P	Field mustard	nucleus	76.5	78.19
CDX88812	Canola	nucleus	76.5	78.19
CDX70980	Canola	nucleus	74.82	76.66
Zm00001d031357_P001	Maize	cytosol, nucleus, plastid	33.81	76.63
Zm00001d006230_P001	Maize	cytosol	52.04	74.83
Zm00001d045645_P001	Maize	cytosol	47.72	74.81
CDY16617	Canola	nucleus	36.93	74.04
VIT_15s0021g02090.t01	Wine grape	cytosol	75.78	71.33
Zm00001d006563_P001	Maize	mitochondrion	46.52	71.32
HORVU6Hr1G065410.3	Barley	cytosol, mitochondrion	49.4	70.55
Zm00001d026185_P001	Maize	endoplasmic reticulum	79.86	66.2
Zm00001d004840_P001	Maize	mitochondrion	52.76	64.14
VIT_10s0003g00260.t01	Wine grape	cytosol	31.65	38.6
VIT_01s0026g01450.t01	Wine grape	cytosol	24.94	38.1
VIT_04s0008g04300.t01	Wine grape	cytosol	30.94	38.05
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	31.18	37.68
VIT_08s0105g00350.t01	Wine grape	cytosol	29.98	36.98
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	29.02	34.67
VIT_13s0064g01360.t01	Wine grape	mitochondrion	27.34	25.28
VIT_00s0324g00040.t01	Wine grape	plastid	28.06	24.32
VIT_09s0002g07210.t01	Wine grape	plastid	28.3	24.13
VIT_17s0000g02030.t01	Wine grape	plastid	27.58	23.91
VIT_18s0001g06970.t01	Wine grape	endoplasmic reticulum, extracellular	18.7	22.48
VIT_12s0034g02190.t01	Wine grape	nucleus	16.31	19.83

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100251979	wikigene:100251979	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20
UniProt:A5ALT5	EMBL:AM429733	ProteinID:CAN64692	ProteinID:CAN64692.1	ProteinID:CCB51612	ProteinID:CCB51612.1
ncoils:Coil	InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EMBL:FN595757
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072
GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100251979	wikigene:LOC100251979	HAMAP:MF_01152
PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493
SUPFAM:SSF57938	TIGR:TC53596	UniParc:UPI000151EED4	ArrayExpress:VIT_06s0080g01230	EnsemblPlantsGene:VIT_06s0080g01230	EnsemblPlants:VIT_06s0080g01230.t01
unigene:Vvi.1660	RefSeq:XP_002270362	RefSeq:XP_002270362.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:21412098..21415608

Molecular Weight (calculated)

46360.9 Da

IEP (calculated)

5.945

GRAVY (calculated)

-0.762

Length

417 amino acids

Sequence
(BLAST)

001: MFGRAPKKSD NTRYYETLGV SKNASQDDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGSGGGHD PFDIFQSFFG
101: GSPFGGGGSS RGRRQRRGED VVHPLKVSLE DLYIGTSKKL SLSRNVICSK CNGKGSKSGA SIKCNGCQGS GMKVSIRQLG PSMIQQMQHP CNECKGTGET
201: INDKDRCPQC KGEKVVQEKK VLEVIVEKGM QNGQKVTFPG EADEAPDTVT GDIVFVLQQK EHPKFKRKGD DLFVEHTLSL TEALCGFQFI LTHLDGRQLL
301: IKSNPGEVVK PDQFKAINDE GMPIYQRPFM RGKLYIQFNV EFPDTLSPEQ CKALEAVLPA RATTQLTDME LDECEETTLH DVNIEEEMRR KQAQAQEAYE
401: EDEEMPGGAQ RVQCAQQ

Best Arabidopsis Sequence Match ( AT3G44110.1 )
(BLAST)

001: MFGRGPSKKS DNTKFYEILG VPKSASPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GGGPFGGNTS RQRRQRRGED VVHPLKVSLE DVYLGTMKKL SLSRNALCSK CNGKGSKSGA SLKCGGCQGS GMKVSIRQLG PGMIQQMQHA CNECKGTGET
201: INDRDRCPQC KGDKVIPEKK VLEVNVEKGM QHSQKITFEG QADEAPDTVT GDIVFVLQQK EHPKFKRKGE DLFVEHTLSL TEALCGFQFV LTHLDGRSLL
301: IKSNPGEVVK PDSYKAISDE GMPIYQRPFM KGKLYIHFTV EFPDSLSPDQ TKALEAVLPK PSTAQLSDME IDECEETTLH DVNIEDEMRR KAQAQREAYD
401: DDDEDDDHPG GAQRVQCAQQ

Arabidopsis Description

ATJ3DnaJ protein homolog atj3 [Source:UniProtKB/TrEMBL;Acc:Q0WW92]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.