Factsheet for PGSC0003DMT400007728

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44110.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g071830.1.1	Tomato	plastid	95.7	95.93
VIT_06s0080g01230.t01	Wine grape	cytosol	84.25	84.65
KRH25334	Soybean	nucleus	83.77	84.17
KRG88903	Soybean	nucleus	83.29	83.69
VIT_13s0073g00560.t01	Wine grape	cytosol	82.82	83.41
KRH22611	Soybean	nucleus	82.82	83.21
PGSC0003DMT400005019	Potato	cytosol	82.58	82.58
PGSC0003DMT400060145	Potato	cytosol	82.58	82.58
KRH26709	Soybean	nucleus	82.1	82.49
PGSC0003DMT400065401	Potato	nucleus	80.43	80.43
AT3G44110.1	Thale cress	nucleus	79.0	78.81
CDY65546	Canola	nucleus	78.04	77.67
CDX92386	Canola	nucleus	78.04	77.49
CDX92385	Canola	nucleus	78.04	77.49
Bra002385.1-P	Field mustard	nucleus	78.04	77.49
Bra002386.1-P	Field mustard	nucleus	77.8	77.25
CDY09117	Canola	nucleus	77.8	77.07
AT5G22060.1	Thale cress	cytosol	76.61	76.61
Bra020169.1-P	Field mustard	nucleus	77.33	76.6
Bra006608.1-P	Field mustard	nucleus	72.55	74.51
CDX88812	Canola	nucleus	72.55	74.51
CDX70980	Canola	nucleus	72.08	74.2
CDY16617	Canola	nucleus	35.32	71.15
PGSC0003DMT400066980	Potato	nucleus	70.17	70.0
PGSC0003DMT400018083	Potato	nucleus	69.69	69.69
PGSC0003DMT400007444	Potato	cytosol	28.88	39.03
PGSC0003DMT400083824	Potato	cytosol	29.83	38.58
PGSC0003DMT400045398	Potato	mitochondrion	28.16	37.94
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	31.03	37.68
PGSC0003DMT400081223	Potato	cytosol	29.59	36.36
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	29.59	36.26
PGSC0003DMT400059397	Potato	cytosol	29.12	35.88
PGSC0003DMT400083040	Potato	cytosol	27.68	34.42
PGSC0003DMT400032760	Potato	plastid	27.92	26.29
PGSC0003DMT400064990	Potato	mitochondrion	26.25	24.83
PGSC0003DMT400062759	Potato	cytosol	19.81	23.92
PGSC0003DMT400036786	Potato	plastid	28.88	22.74
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	14.08	15.32

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102606249	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	ncoils:Coil
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150
GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082
InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	UniProt:M0ZTF3	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556
EnsemblPlantsGene:PGSC0003DMG400002987	PGSC:PGSC0003DMG400002987	EnsemblPlants:PGSC0003DMT400007728	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493
SUPFAM:SSF57938	UniParc:UPI0002948F98	RefSeq:XP_006340318.1	SEG:seg	:	:

Description

DNAJ protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002987]

Coordinates

chr11:-:43281930..43285433

Molecular Weight (calculated)

46643.3 Da

IEP (calculated)

6.044

GRAVY (calculated)

-0.785

Length

419 amino acids

Sequence
(BLAST)

001: MFGRGGKKKS DNTRFYEILG VSKNASEDEI KKAYRKAAMK NHPDKGGDPE KFKELAQAYE VLSDSQKREI YDQYGEEALK EGMGGGGGTH DPFDLFNSFF
101: SGSPFGGGGG RRGQRERRGD DVVHPLKVSL EDLYTGITKK LSLSRNVICS KCSGKGSKSG DSMKCSGCEG TGMKVSIRQL GPGMIQQMQH PCNKCKGTGE
201: TIDDKDRCPQ CKGEKVVQEK KVIEVHVDKG MQNGQKITFP GEADEAPDTV TGDVVFVLQQ KEHPKFKRKG EDLFVDHTLT LTEALCGFQF ILTHLDGRQL
301: LIKSNPGEVV KPDQFKAIND EGMPVYQRPF MKGKLYIHFT VEFPDSLSLP QVQLLEAILP PRPTSQYSDM ELDECEETTL HDVNMEEEMR RKQAAQQEAY
401: DEDEEMSGSG GQRVQCAQQ

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.