Factsheet for PGSC0003DMT400083040

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071110.2.1	Tomato	nucleus	98.22	98.22
KRH63415	Soybean	cytosol	34.72	79.59
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	72.7	70.2
KRH54495	Soybean	nucleus	72.11	69.23
Bra033783.1-P	Field mustard	cytosol	66.17	68.62
CDY36915	Canola	cytosol	67.95	68.56
PGSC0003DMT400007444	Potato	cytosol	62.91	68.39
Bra018099.1-P	Field mustard	cytosol	67.66	68.26
CDX83026	Canola	cytosol	66.17	67.99
PGSC0003DMT400045398	Potato	mitochondrion	62.31	67.52
Bra019519.1-P	Field mustard	cytosol	66.47	67.47
CDX68447	Canola	cytosol	67.66	66.47
AT3G47940.1	Thale cress	cytosol	67.06	64.57
CDY21803	Canola	nucleus	64.09	63.91
CDY24146	Canola	cytosol	67.66	60.48
KRH63417	Soybean	nucleus	35.91	59.61
PGSC0003DMT400059397	Potato	cytosol	59.35	58.82
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	59.05	58.19
PGSC0003DMT400083824	Potato	cytosol	55.19	57.41
PGSC0003DMT400081223	Potato	cytosol	57.57	56.89
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	32.05	31.3
PGSC0003DMT400062759	Potato	cytosol	32.05	31.12
PGSC0003DMT400060145	Potato	cytosol	35.61	28.64
PGSC0003DMT400005019	Potato	cytosol	35.61	28.64
PGSC0003DMT400065401	Potato	nucleus	35.31	28.4
PGSC0003DMT400007728	Potato	nucleus	34.42	27.68
PGSC0003DMT400066980	Potato	nucleus	32.64	26.19
PGSC0003DMT400018083	Potato	nucleus	32.34	26.01
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	27.3	23.9
PGSC0003DMT400032760	Potato	plastid	28.49	21.57
PGSC0003DMT400064990	Potato	mitochondrion	25.22	19.19
PGSC0003DMT400036786	Potato	plastid	25.82	16.35

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102592362	MapMan:19.1.5.2	Gene3D:2.60.260.20	InterPro:DnaJ_C	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:M1D6D9	PFAM:PF00226	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400033033	PGSC:PGSC0003DMG400033033	EnsemblPlants:PGSC0003DMT400083040
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF524	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	UniParc:UPI000295F4C4	RefSeq:XP_006354802.1	:	:

Description

Chaperone protein dnaJ [Source:PGSC_GENE;Acc:PGSC0003DMG400033033]

Coordinates

chr6:-:51946922..51956030

Molecular Weight (calculated)

37609.9 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.705

Length

337 amino acids

Sequence
(BLAST)

001: MGVDYYNILK VNRNASEEDL RKAYRRLAMI WHPDKNLGTN KYEAEAKFKQ ISEAYDVLSD PQKRQIYDLY GEEALKTGQV PPPPRGGPHN MRNPHPNPSF
101: RFNPRDAEDI YAELFGASSS ENNGRARKTR DGFFRSTTNG GAEFSGAGNS STGGLRKAAP VENALLCSLE DLYKGAKKKM KISRTVLDAS GKLRTLEEIL
201: TIDIKPGWKK GTKVTFPEKG NEEPGIIPAD LVFVIEEKPH HVYVRDGNDL TVNQEISLLE ALTGKTLELT TLDGRNLTIP LTDIVKPGHE IVVPNEGMPI
301: SKEPRKKGNL RIKIDVKYPT RLTEAQKSDL RRVLGQG

Best Arabidopsis Sequence Match ( AT3G47940.1 )
(BLAST)

001: MGVDYYNILK VNHNATEDDL KKAYKRLAMI WHPDKNPSTR RDEAEAKFKR ISEAYDVLSD PQKRQIYDLY GEEGLKSGKI PNSSSSEASS SSSSSSSRYP
101: HFHQHRPQHP PNASSFRFNP RDAEDIYAEF FGSENGGGSN NAGGRGNRAF RNGHFNTGGA NGYSGEMRKV PAMENPLPVS LEDLYKGVVK KMRITRNVYD
201: ASGRMMVEAE ILPIEIKPGW KKGTKLTFPK KGNEEPGIIP ADIVFVVEEK PHPVYKRDGN DLLVSQEITL LEALTGKTVN LITLDGRTLM IPLTEIIKPD
301: HEIVVPNEGM PISKEPGKKG NLKLKLSVKY PSRLTSDQKF ELKRVLGGVS

Arabidopsis Description

DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9SU57]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.