Factsheet for PGSC0003DMT400018083

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066980	Potato	nucleus	80.91	80.71
GSMUA_Achr11P...	Banana	cytosol	68.97	75.85
KRH66593	Soybean	endoplasmic reticulum	74.7	74.52
GSMUA_Achr8P11020_001	Banana	nucleus	70.64	74.0
KRH48754	Soybean	endoplasmic reticulum	73.99	73.81
EES07516	Sorghum	nucleus	72.55	72.38
Os02t0656500-01	Rice	nucleus	72.08	71.9
PGSC0003DMT400005019	Potato	cytosol	71.84	71.84
VIT_15s0021g02090.t01	Wine grape	cytosol	75.89	71.78
PGSC0003DMT400060145	Potato	cytosol	71.6	71.6
Zm00001d017476_P001	Maize	plasma membrane	72.08	71.56
TraesCS6D01G232600.1	Wheat	nucleus	72.31	71.29
TraesCS6B01G274600.1	Wheat	nucleus	72.31	71.29
TraesCS6A01G250800.1	Wheat	nucleus	72.31	71.29
PGSC0003DMT400065401	Potato	nucleus	70.64	70.64
OQU82085	Sorghum	nucleus	69.93	70.1
Os04t0549600-01	Rice	cytosol	69.21	69.71
PGSC0003DMT400007728	Potato	nucleus	69.69	69.69
HORVU0Hr1G016360.1	Barley	cytosol	27.45	64.97
HORVU0Hr1G018300.1	Barley	plastid	73.03	63.22
PGSC0003DMT400045398	Potato	mitochondrion	27.45	36.98
PGSC0003DMT400007444	Potato	cytosol	27.21	36.77
PGSC0003DMT400083824	Potato	cytosol	27.92	36.11
PGSC0003DMT400081223	Potato	cytosol	29.36	36.07
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	29.36	35.96
PGSC0003DMT400059397	Potato	cytosol	28.88	35.59
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	28.88	35.07
PGSC0003DMT400083040	Potato	cytosol	26.01	32.34
PGSC0003DMT400032760	Potato	plastid	26.73	25.17
PGSC0003DMT400064990	Potato	mitochondrion	24.58	23.25
PGSC0003DMT400062759	Potato	cytosol	18.38	22.19
PGSC0003DMT400036786	Potato	plastid	27.21	21.43
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	14.56	15.84

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102592889	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd
InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:M1AA13	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400007026
PGSC:PGSC0003DMG400007026	EnsemblPlants:PGSC0003DMT400018083	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43888	PANTHER:PTHR43888:SF11	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938
UniParc:UPI0002950B1B	RefSeq:XP_006345526.1	RefSeq:XP_006345527.1	RefSeq:XP_015163391.1	RefSeq:XP_015163392.1	RefSeq:XP_015163393.1
RefSeq:XP_015163394.1	SEG:seg	:	:	:	:

Description

DnaJ homolog protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007026]

Coordinates

chr5:+:45358365..45363834

Molecular Weight (calculated)

46926.5 Da

IEP (calculated)

7.702

GRAVY (calculated)

-0.803

Length

419 amino acids

Sequence
(BLAST)

001: MFGRGARRSD NSKYYEVLGV SKNSSQDELK KAYRKSAIKN HPDKGGDPEK FKELAQAYEV LSDPEKRELY DQYGEDALKE GMGGGGGHNP FDIFESFFGG
101: AFGGGGSFRG SRKKKGEDVV HTLRVSLEDL YNGTTKKLSL SRNILCPKCK GKGSKSGASG RCYGCQGTGM RVTTRQIAPG MIQQMQHVCS ECRGSGEVIT
201: ERDRCPQCKG NKITQEKKVL EVNVEKGMLH GQKIVFNAEA DEAPDTITGN VIFVLQQKSH SKFRRKSDDL YVEHNLSLTE ALCGFQFVLT HLDGRQLQIK
301: SSPGEVIKPD QYKAINDEGM PHYGRPFIKG RLYIHFNVEF PESGFLSPEK CRALEAILPP RLGKRSSDIE LGKCEETTMH NVNMEEEMRH EEQRHPRQEA
401: YDTDDEIDAN LHSLGCNQQ

Best Arabidopsis Sequence Match ( AT1G80030.4 )
(BLAST)

001: MAALASPSLI PSSLCFAAAA DGPRSLSSNF SAFSDGGSNF RYHKSFLSLS SSSSSSTPYR NRRGRSLVVF ATSGDYYATL GVSKSANNKE IKAAYRRLAR
101: QYHPDVNKEP GATEKFKEIS AAYEVLSDEQ KRALYDQYGE AGVKSTVGGA SGPYTSNPFD LFETFFGASM GGFPGMDQAD FGRTRRSRVT KGEDLRYDIT
201: LELSEAIFGS EKEFDLTHLE TCEACAGTGA KAGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSICPNCGG DGEVISENCR KCSGEGRVRI KKSIKVKIPP
301: GVSAGSILRV AGEGDSGPRG GPPGDLYVYL DVEDVRGIER DGINLLSTLS ISYLDAILGA VVKVKTVEGD TELQIPPGTQ PGDVLVLAKK GVPKLNRPSI
401: RGDHLFTVKV SVPNQISAGE RELLEELASL KDTSSNRSRT RAKPQQPSTL STAPSGSENK KDEVKEENEE PEQENYLWNN IKEFAG

Arabidopsis Description

Molecular chaperone Hsp40/DnaJ family protein [Source:UniProtKB/TrEMBL;Acc:Q0WN54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.