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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G44110.1 PGSC0003DMT400063187 AT3G48100.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g006460.1.1 Tomato nucleus 98.81 98.81
PGSC0003DMT400060145 Potato cytosol 92.12 92.12
VIT_13s0073g00560.t01 Wine grape cytosol 89.74 90.38
VIT_06s0080g01230.t01 Wine grape cytosol 89.5 89.93
PGSC0003DMT400065401 Potato nucleus 89.5 89.5
KRH25334 Soybean nucleus 88.54 88.97
KRG88903 Soybean nucleus 88.07 88.49
KRH22611 Soybean nucleus 85.92 86.33
KRH26709 Soybean nucleus 84.73 85.13
Bra002385.1-P Field mustard nucleus 84.73 84.12
CDX92386 Canola nucleus 84.73 84.12
AT3G44110.1 Thale cress nucleus 84.25 84.05
CDX92385 Canola nucleus 84.49 83.89
Bra002386.1-P Field mustard nucleus 84.25 83.65
CDY65546 Canola nucleus 83.77 83.37
PGSC0003DMT400007728 Potato nucleus 82.58 82.58
CDY09117 Canola nucleus 83.05 82.27
Bra020169.1-P Field mustard nucleus 82.82 82.03
AT5G22060.1 Thale cress cytosol 81.38 81.38
Bra006608.1-P Field mustard nucleus 76.13 78.19
CDX88812 Canola nucleus 76.13 78.19
CDX70980 Canola nucleus 74.22 76.41
PGSC0003DMT400066980 Potato nucleus 74.94 74.76
CDY16617 Canola nucleus 36.75 74.04
PGSC0003DMT400018083 Potato nucleus 71.84 71.84
PGSC0003DMT400023249 Potato endoplasmic reticulum, golgi 32.22 39.13
PGSC0003DMT400007444 Potato cytosol 28.64 38.71
PGSC0003DMT400083824 Potato cytosol 29.36 37.96
PGSC0003DMT400045398 Potato mitochondrion 28.16 37.94
PGSC0003DMT400059397 Potato cytosol 29.36 36.18
PGSC0003DMT400081223 Potato cytosol 29.12 35.78
PGSC0003DMT400083040 Potato cytosol 28.64 35.61
PGSC0003DMT400024267 Potato cytoskeleton, cytosol, nucleus 28.64 35.09
PGSC0003DMT400032760 Potato plastid 26.97 25.39
PGSC0003DMT400062759 Potato cytosol 20.76 25.07
PGSC0003DMT400064990 Potato mitochondrion 26.01 24.61
PGSC0003DMT400036786 Potato plastid 26.97 21.24
PGSC0003DMT400045241 Potato extracellular, mitochondrion 13.84 15.06
Protein Annotations
Gene3D:1.10.287.110MapMan:19.1.5.2Gene3D:2.10.230.10Gene3D:2.60.260.20InterPro:DnaJInterPro:DnaJ_C
InterPro:DnaJ_domainInterPro:DnaJ_domain_CSGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0006457GO:GO:0006950GO:GO:0008150GO:GO:0009408GO:GO:0009628
GO:GO:0009987GO:GO:0031072GO:GO:0046872GO:GO:0051082InterPro:HSP40/DnaJ_pept-bdInterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sfInterPro:IPR001305InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfUniProt:M0ZPC7
HAMAP:MF_01152PFAM:PF00226PFAM:PF00684PFAM:PF01556EnsemblPlantsGene:PGSC0003DMG400001985PGSC:PGSC0003DMG400001985
EnsemblPlants:PGSC0003DMT400005019PRINTS:PR00625ScanProsite:PS00636PFscan:PS50076PFscan:PS51188PANTHER:PTHR43888
PANTHER:PTHR43888:SF4SMART:SM00271SUPFAM:SSF46565SUPFAM:SSF49493SUPFAM:SSF57938UniParc:UPI0002954393
SEG:seg:::::
Description
DnaJ [Source:PGSC_GENE;Acc:PGSC0003DMG400001985]
Coordinates
chr11:+:6110705..6113937
Molecular Weight (calculated)
46622.4 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.798
Length
419 amino acids
Sequence
(BLAST)
001: MFGRAPKKSD NTKYYEILGV PKAASQEDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGGGGGHD PFDIFQSFFG
101: GGGSPFGGGG SSRARRQRRG EDVIHPLKVS LEDLYNGTSK KLSLSRNVLC SKCKGKGSKS GASMKCSGCQ GSGMKVSIRQ LGPSMIQQMQ HPCNECKGTG
201: ETISDKDRCP QCKGEKVVQE KKVLEVHVEK GMQNGQKVTF PGEADEAPET ITGDIVFVLQ QKEHPKFKRK GDDLFVEHTL TLTEALCGFQ FVLTHLDNRQ
301: LLIKSQPGEV VKPDQFKAIN DEGMPMYQRP FMRGKMYIHF TVDFPESLTP EQCKNLEAVL PPRPKLQVSD MELDECEETT LHDVNIEDEM RRKQQAAQEA
401: YDEDDDMPGG AQRVQCAQQ
Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)
001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ
Arabidopsis Description
ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.