Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g113720.2.1 | Tomato | nucleus | 92.0 | 94.36 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 55.5 | 62.01 |
| Bra018084.1-P | Field mustard | cytosol, nucleus, plastid | 55.5 | 62.01 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 54.5 | 61.58 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 56.5 | 61.41 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 56.0 | 61.2 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 56.0 | 60.87 |
| KRH54462 | Soybean | cytosol | 62.0 | 60.78 |
| KRH63457 | Soybean | cytosol | 62.0 | 60.78 |
| CDY70164 | Canola | nucleus | 55.5 | 60.66 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 55.5 | 60.66 |
| CDY36905 | Canola | nucleus | 55.5 | 60.66 |
| Bra033773.1-P | Field mustard | nucleus | 54.5 | 60.56 |
| Bra015885.1-P | Field mustard | cytosol, golgi, peroxisome | 56.0 | 60.54 |
| AT3G48100.1 | Thale cress | cytosol | 55.5 | 60.33 |
| AT5G62920.1 | Thale cress | cytosol | 55.0 | 59.14 |
| KRH03376 | Soybean | nucleus | 61.0 | 58.94 |
| KRH57009 | Soybean | nucleus | 62.0 | 58.77 |
| AT1G74890.1 | Thale cress | nucleus | 60.0 | 58.25 |
| PGSC0003DMT400042922 | Potato | cytosol | 41.5 | 56.08 |
| CDX68161 | Canola | cytosol | 55.0 | 55.84 |
| Bra003782.1-P | Field mustard | cytosol | 55.0 | 55.84 |
| CDY00336 | Canola | nucleus | 53.0 | 55.79 |
| CDX84366 | Canola | nucleus | 53.0 | 55.79 |
| Bra010132.1-P | Field mustard | nucleus | 53.0 | 55.79 |
| PGSC0003DMT400070964 | Potato | cytosol, nucleus, plastid | 42.5 | 54.49 |
| AT1G19050.1 | Thale cress | cytosol | 56.0 | 54.37 |
| CDY41014 | Canola | nucleus | 57.5 | 53.74 |
| CDX96681 | Canola | cytosol | 55.5 | 53.62 |
| Bra016526.1-P | Field mustard | cytosol | 55.5 | 53.62 |
| CDY26701 | Canola | nucleus | 57.0 | 53.52 |
| Bra025708.1-P | Field mustard | nucleus | 57.0 | 53.52 |
| CDX83788 | Canola | cytosol | 56.0 | 52.83 |
| Bra019524.1-P | Field mustard | cytosol | 35.0 | 52.24 |
| PGSC0003DMT400007977 | Potato | nucleus | 41.0 | 50.31 |
| VIT_17s0000g07580.t01 | Wine grape | cytosol, nucleus, plastid | 63.0 | 48.84 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 53.0 | 48.62 |
| PGSC0003DMT400058306 | Potato | nucleus | 53.5 | 43.15 |
| PGSC0003DMT400007618 | Potato | nucleus | 42.0 | 39.25 |
| PGSC0003DMT400076726 | Potato | nucleus | 43.5 | 38.5 |
| PGSC0003DMT400076758 | Potato | nucleus | 43.0 | 38.05 |
Protein Annotations
| MapMan:11.4.2.5 | Gene3D:3.40.50.2300 | InterPro:CheY-like_superfamily | ncoils:Coil | GO:GO:0000160 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:IPR001789 | UniProt:M1CA79 | PFAM:PF00072 | EnsemblPlantsGene:PGSC0003DMG400024578 | PGSC:PGSC0003DMG400024578 | EnsemblPlants:PGSC0003DMT400063187 |
| PFscan:PS50110 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF36 | SMART:SM00448 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver |
| UniParc:UPI000294DE04 | SEG:seg | : | : | : | : |
Description
Type-A response regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400024578]
Coordinates
chr3:-:53610389..53612417
Molecular Weight (calculated)
22146.6 Da
IEP (calculated)
5.424
GRAVY (calculated)
-0.369
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQELHVLAV DDSHVDRKVI ERLLEISCCK VTAVESGTRA LQYLGLDGEK SSMGIDGLKV NLILTDYSMP GMTGYELLKK IKESSVLSKI PVVIMSSEKI
101: LPRIDRCLEE GAEEFLLKPV KLSDVKRLRD FILRGEGDDN KETENNIKQV CSRKRKFQDD STTQSMLSAV VTAHDIESSS PESSASSESQ QPLSKQSKIG
101: LPRIDRCLEE GAEEFLLKPV KLSDVKRLRD FILRGEGDDN KETENNIKQV CSRKRKFQDD STTQSMLSAV VTAHDIESSS PESSASSESQ QPLSKQSKIG
001: MALRDLSSSL SSSSSPELHV LAVDDSFVDR KVIERLLKIS ACKVTTVESG TRALQYLGLD GDNGSSGLKD LKVNLIVTDY SMPGLTGYEL LKKIKESSAL
101: REIPVVIMSS ENIQPRIEQC MIEGAEEFLL KPVKLADVKR LKELIMRGGE AEEGKTKKLS PKRILQNDID SSPSSSSTSS SSSSHDVSSL DDDTPSSKRI
201: KLESRG
101: REIPVVIMSS ENIQPRIEQC MIEGAEEFLL KPVKLADVKR LKELIMRGGE AEEGKTKKLS PKRILQNDID SSPSSSSTSS SSSSHDVSSL DDDTPSSKRI
201: KLESRG
Arabidopsis Description
ARR15Two-component response regulator ARR15 [Source:UniProtKB/Swiss-Prot;Acc:Q7G8V2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.