Factsheet for PGSC0003DMT400022579

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006900.2.1	Tomato	nucleus	99.25	99.25
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	29.32	92.86
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	90.23	90.23
PGSC0003DMT400005838	Potato	cytosol	90.23	90.23
EER97002	Sorghum	cytosol	88.72	88.72
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	88.72	88.72
Os09t0502000-01	Rice	nucleus	88.72	88.72
Os09t0501200-01	Rice	nucleus	88.72	88.72
KRH18320	Soybean	endoplasmic reticulum	88.72	88.72
GSMUA_Achr10P...	Banana	cytosol	87.97	87.97
KRH12802	Soybean	cytosol	87.97	87.97
Zm00001d021020_P001	Maize	mitochondrion, plastid	87.97	87.97
Zm00001d049790_P007	Maize	cytosol	87.97	87.97
Zm00001d006064_P002	Maize	cytosol	87.97	87.31
KRH31095	Soybean	nucleus	87.22	87.22
KRH58920	Soybean	cytosol, plastid	87.22	87.22
GSMUA_Achr7P19740_001	Banana	cytosol	87.22	87.22
KRH42824	Soybean	cytosol, plastid	87.22	87.22
EER99136	Sorghum	cytosol	87.22	87.22
EES15331	Sorghum	cytosol	87.22	87.22
KRH67946	Soybean	endoplasmic reticulum	86.47	86.47
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	86.47	85.82
TraesCS5A01G279100.1	Wheat	golgi	85.71	85.71
KRH42825	Soybean	nucleus	85.71	85.71
TraesCS7B01G152900.1	Wheat	golgi, unclear	85.71	85.71
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	84.96	84.96
PGSC0003DMT400054361	Potato	cytosol	48.12	84.21
AT4G18100.1	Thale cress	cytosol	83.46	83.46
TraesCS5A01G279400.1	Wheat	unclear	83.46	83.46
TraesCS5B01G278700.1	Wheat	cytosol	83.46	83.46
TraesCS5D01G286400.1	Wheat	cytosol	83.46	83.46
HORVU7Hr1G052800.8	Barley	cytosol	82.71	82.71
Bra013284.1-P	Field mustard	cytosol	81.95	81.95
Bra021023.1-P	Field mustard	cytosol	81.95	81.95
CDX76545	Canola	cytosol	81.95	81.95
CDX78825	Canola	cytosol	81.95	81.95
CDX90420	Canola	cytosol	81.95	81.95
CDY61673	Canola	cytosol	81.95	81.95
CDY01520	Canola	extracellular	81.95	81.95
CDY35163	Canola	cytosol	81.95	81.95
CDY08886	Canola	cytosol	81.95	81.95
Bra012616.1-P	Field mustard	cytosol	81.95	81.95
AT5G46430.1	Thale cress	cytosol	81.2	81.2
CDX77662	Canola	cytosol	81.2	81.2
CDY03219	Canola	cytosol	81.2	81.2
CDY33476	Canola	cytosol	81.2	81.2
Bra017545.1-P	Field mustard	cytosol	80.45	80.45
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	86.47	77.7
HORVU5Hr1G075500.3	Barley	cytosol	83.46	75.51
Zm00001d021018_P002	Maize	cytosol	87.97	75.48
HORVU5Hr1G075420.2	Barley	plastid	84.96	73.86
GSMUA_Achr6P12040_001	Banana	cytosol	87.22	71.17
TraesCS7A01G256300.1	Wheat	cytosol	87.22	71.17
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	86.47	70.55
KRH12807	Soybean	cytosol	55.64	69.16
Os09t0501700-00	Rice	nucleus	87.97	68.82
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	85.71	65.52
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	85.71	65.52
Zm00001d031560_P001	Maize	plastid	87.97	57.07
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	89.47	31.48

Protein Annotations

EntrezGene:102603686	MapMan:17.1.2.1.33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M1AGY0	PFAM:PD003823
PFAM:PF01655	EnsemblPlantsGene:PGSC0003DMG400008754	PGSC:PGSC0003DMG400008754	EnsemblPlants:PGSC0003DMT400022579	ScanProsite:PS00580	PANTHER:PTHR23413
InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS	InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	UniParc:UPI0002959663
RefSeq:XP_006362510.1	SEG:seg	:	:	:	:

Description

Ly200 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008754]

Coordinates

chr8:+:1352916..1355365

Molecular Weight (calculated)

15614.4 Da

IEP (calculated)

11.334

GRAVY (calculated)

-0.709

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLTKKV VKKRVKQFKR PQCDRRITVK PSWRRPKGID SRVRRKFKGC VLMPNIGYGS DKKTRHYLPN GFKKFVVHNA SELEILMMHN RTYCAEIAHN
101: VSTRKRKEIV ERAAQLDVVI TNKLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.