Factsheet for GSMUA_Achr6P12040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P19740_001	Banana	cytosol	79.14	96.99
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	24.54	95.24
GSMUA_Achr10P...	Banana	cytosol	77.3	94.74
KRH58920	Soybean	cytosol, plastid	76.07	93.23
KRH31095	Soybean	nucleus	76.07	93.23
KRH42824	Soybean	cytosol, plastid	76.07	93.23
KRH67946	Soybean	endoplasmic reticulum	75.46	92.48
KRH42825	Soybean	nucleus	74.85	91.73
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	74.85	91.73
Os09t0502000-01	Rice	nucleus	74.23	90.98
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	74.23	90.98
KRH12802	Soybean	cytosol	73.62	90.23
Os09t0501200-01	Rice	nucleus	73.01	89.47
KRH18320	Soybean	endoplasmic reticulum	73.01	89.47
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	73.01	88.81
Zm00001d049790_P007	Maize	cytosol	72.39	88.72
Zm00001d021020_P001	Maize	mitochondrion, plastid	72.39	88.72
EER97002	Sorghum	cytosol	71.78	87.97
EER99136	Sorghum	cytosol	71.78	87.97
EES15331	Sorghum	cytosol	71.78	87.97
TraesCS7B01G152900.1	Wheat	golgi, unclear	71.78	87.97
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	71.78	87.97
Solyc08g006900.2.1	Tomato	nucleus	71.78	87.97
PGSC0003DMT400022579	Potato	cytosol	71.17	87.22
HORVU7Hr1G052800.8	Barley	cytosol	71.17	87.22
Zm00001d006064_P002	Maize	cytosol	71.17	86.57
TraesCS5A01G279100.1	Wheat	golgi	70.55	86.47
TraesCS5A01G279400.1	Wheat	unclear	68.71	84.21
TraesCS5B01G278700.1	Wheat	cytosol	68.71	84.21
TraesCS5D01G286400.1	Wheat	cytosol	68.71	84.21
CDY33476	Canola	cytosol	67.48	82.71
CDX77662	Canola	cytosol	67.48	82.71
CDY03219	Canola	cytosol	67.48	82.71
CDX90420	Canola	cytosol	66.87	81.95
CDX78825	Canola	cytosol	66.87	81.95
CDY01520	Canola	extracellular	66.87	81.95
CDX76545	Canola	cytosol	66.87	81.95
Bra021023.1-P	Field mustard	cytosol	66.87	81.95
CDY35163	Canola	cytosol	66.87	81.95
Bra017545.1-P	Field mustard	cytosol	66.87	81.95
CDY61673	Canola	cytosol	66.87	81.95
CDY08886	Canola	cytosol	66.87	81.95
Bra013284.1-P	Field mustard	cytosol	66.87	81.95
Bra012616.1-P	Field mustard	cytosol	66.87	81.95
AT4G18100.1	Thale cress	cytosol	65.64	80.45
Solyc02g070310.2.1	Tomato	nucleus, plastid	65.64	80.45
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	73.01	80.41
PGSC0003DMT400054361	Potato	cytosol	37.42	80.26
AT5G46430.1	Thale cress	cytosol	65.03	79.7
PGSC0003DMT400005838	Potato	cytosol	65.03	79.7
VIT_00s0260g00080.t01	Wine grape	cytosol	63.19	76.3
HORVU5Hr1G075500.3	Barley	cytosol	68.71	76.19
HORVU5Hr1G075420.2	Barley	plastid	70.55	75.16
Zm00001d021018_P002	Maize	cytosol	71.17	74.84
TraesCS7A01G256300.1	Wheat	cytosol	73.01	73.01
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	72.39	72.39
Os09t0501700-00	Rice	nucleus	74.23	71.18
KRH12807	Soybean	cytosol	46.01	70.09
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	70.55	66.09
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	70.55	66.09
Zm00001d031560_P001	Maize	plastid	72.39	57.56
CDY35926	Canola	cytosol	27.61	36.59
CDY28057	Canola	cytosol	28.83	34.31
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	64.42	27.78

Protein Annotations

MapMan:17.1.2.1.33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G12040_001	EnsemblPlants:GSMUA_Achr6P12040_001	EnsemblPlants:GSMUA_Achr6T12040_001
UniProt:M0T6A2	PFAM:PD003823	PFAM:PF01655	PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_sf
SMART:SM01393	SUPFAM:SSF52042	UniParc:UPI0002954A0B	:	:	:

Description

60S ribosomal protein L32-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G12040_001]

Coordinates

chr6:+:7965675..7968901

Molecular Weight (calculated)

18948.5 Da

IEP (calculated)

11.404

GRAVY (calculated)

-0.672

Length

163 amino acids

Sequence
(BLAST)

001: MKRTKVVPPR VHIRGSEFWD GGVDAQNAAK MAVPLLTKRI VKKRVKQFKR PQSDRKICVK TNWRRPKGID SRVRRKFKGC TLMPNIGYGS DKKTRHYLPN
101: GFKKFVVHNV ADLELLMMHN RTYCAEIAHN ISTKKRKLIV ERAAQLDIVV TNKLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.