Factsheet for PGSC0003DMT400005838

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070310.2.1	Tomato	nucleus, plastid	99.25	99.25
PGSC0003DMT400022579	Potato	cytosol	90.23	90.23
PGSC0003DMT400054361	Potato	cytosol	51.13	89.47
AT4G18100.1	Thale cress	cytosol	87.97	87.97
Bra012616.1-P	Field mustard	cytosol	86.47	86.47
Bra013284.1-P	Field mustard	cytosol	86.47	86.47
Bra021023.1-P	Field mustard	cytosol	86.47	86.47
CDX76545	Canola	cytosol	86.47	86.47
CDX78825	Canola	cytosol	86.47	86.47
CDX90420	Canola	cytosol	86.47	86.47
CDY01520	Canola	extracellular	86.47	86.47
CDY08886	Canola	cytosol	86.47	86.47
CDY61673	Canola	cytosol	86.47	86.47
CDY35163	Canola	cytosol	86.47	86.47
AT5G46430.1	Thale cress	cytosol	85.71	85.71
CDY33476	Canola	cytosol	85.71	85.71
CDY03219	Canola	cytosol	85.71	85.71
CDX77662	Canola	cytosol	85.71	85.71
Bra017545.1-P	Field mustard	cytosol	84.96	84.96
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	84.21	84.21
Os09t0501200-01	Rice	nucleus	83.46	83.46
KRH18320	Soybean	endoplasmic reticulum	83.46	83.46
KRH12802	Soybean	cytosol	82.71	82.71
Os09t0502000-01	Rice	nucleus	81.95	81.95
KRH67946	Soybean	endoplasmic reticulum	81.2	81.2
KRH58920	Soybean	cytosol, plastid	81.2	81.2
KRH42824	Soybean	cytosol, plastid	81.2	81.2
KRH31095	Soybean	nucleus	81.2	81.2
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	81.2	81.2
TraesCS5A01G279100.1	Wheat	golgi	80.45	80.45
GSMUA_Achr10P...	Banana	cytosol	80.45	80.45
GSMUA_Achr7P19740_001	Banana	cytosol	80.45	80.45
EER97002	Sorghum	cytosol	80.45	80.45
Zm00001d049790_P007	Maize	cytosol	79.7	79.7
TraesCS7B01G152900.1	Wheat	golgi, unclear	79.7	79.7
KRH42825	Soybean	nucleus	79.7	79.7
Zm00001d021020_P001	Maize	mitochondrion, plastid	79.7	79.7
Zm00001d006064_P002	Maize	cytosol	79.7	79.1
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	79.7	79.1
EES15331	Sorghum	cytosol	78.95	78.95
EER99136	Sorghum	cytosol	78.95	78.95
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	24.81	78.57
TraesCS5A01G279400.1	Wheat	unclear	78.2	78.2
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	78.2	78.2
TraesCS5B01G278700.1	Wheat	cytosol	78.2	78.2
TraesCS5D01G286400.1	Wheat	cytosol	78.2	78.2
HORVU7Hr1G052800.8	Barley	cytosol	76.69	76.69
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	79.7	71.62
HORVU5Hr1G075500.3	Barley	cytosol	78.2	70.75
HORVU5Hr1G075420.2	Barley	plastid	79.7	69.28
Zm00001d021018_P002	Maize	cytosol	79.7	68.39
KRH12807	Soybean	cytosol	54.89	68.22
TraesCS7A01G256300.1	Wheat	cytosol	80.45	65.64
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	79.7	65.03
GSMUA_Achr6P12040_001	Banana	cytosol	79.7	65.03
Os09t0501700-00	Rice	nucleus	81.2	63.53
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	80.45	61.49
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	80.45	61.49
Zm00001d031560_P001	Maize	plastid	79.7	51.71
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	96.24	33.86

Protein Annotations

EntrezGene:102580984	EntrezGene:102588702	EntrezGene:102595475	MapMan:17.1.2.1.33	ProteinID:ABA40471	ProteinID:ABA40471.1
ProteinID:ABB02639	ProteinID:ABB02639.1	EMBL:DQ191670	EMBL:DQ222508	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:M0ZQH0	PFAM:PD003823	PFAM:PF01655	EnsemblPlantsGene:PGSC0003DMG400002274	PGSC:PGSC0003DMG400002274	EnsemblPlants:PGSC0003DMT400005838
ScanProsite:PS00580	PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS	InterPro:Ribosomal_L32e_sf	SMART:SM01393
SUPFAM:SSF52042	UniParc:UPI0002964163	RefSeq:XP_006352982.1	RefSeq:XP_006354243.1	RefSeq:XP_006358333.1	RefSeq:XP_015166632.1
SEG:seg	:	:	:	:	:

Description

Ly200 [Source:PGSC_GENE;Acc:PGSC0003DMG400002274]

Coordinates

chr8:+:881370..881771

Molecular Weight (calculated)

15665.4 Da

IEP (calculated)

11.309

GRAVY (calculated)

-0.686

Length

133 amino acids

Sequence
(BLAST)

001: MVVPLLNKKV VKKRVKRFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGC VLMPNIGYGS DKKTRHYLPN GFKKFVVHNA SELEILMMHN RTYCAEIAHN
101: VSTRKRKEIV ERAAQLDVVI TNKLARLHSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.