CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	KRH03376	AT3G48100.1	18642946
AT5G46430.1	KRH54462	AT3G48100.1	18642946
AT5G46430.1	KRH57009	AT3G48100.1	18642946
AT5G46430.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18320	Soybean	endoplasmic reticulum	99.25	99.25
KRH31095	Soybean	nucleus	95.49	95.49
KRH42824	Soybean	cytosol, plastid	95.49	95.49
KRH58920	Soybean	cytosol, plastid	95.49	95.49
KRH67946	Soybean	endoplasmic reticulum	94.74	94.74
KRH42825	Soybean	nucleus	93.98	93.98
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	91.73	91.73
GSMUA_Achr7P19740_001	Banana	cytosol	89.47	89.47
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	89.47	89.47
GSMUA_Achr10P...	Banana	cytosol	89.47	89.47
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	27.82	88.1
PGSC0003DMT400022579	Potato	cytosol	87.97	87.97
Solyc08g006900.2.1	Tomato	nucleus	87.22	87.22
Os09t0501200-01	Rice	nucleus	86.47	86.47
Os09t0502000-01	Rice	nucleus	86.47	86.47
TraesCS5A01G279100.1	Wheat	golgi	86.47	86.47
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	86.47	85.82
EER97002	Sorghum	cytosol	85.71	85.71
TraesCS7B01G152900.1	Wheat	golgi, unclear	85.71	85.71
Zm00001d049790_P007	Maize	cytosol	84.96	84.96
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	84.96	84.96
Zm00001d021020_P001	Maize	mitochondrion, plastid	84.96	84.96
Zm00001d006064_P002	Maize	cytosol	84.96	84.33
EES15331	Sorghum	cytosol	84.21	84.21
EER99136	Sorghum	cytosol	84.21	84.21
TraesCS5D01G286400.1	Wheat	cytosol	84.21	84.21
TraesCS5B01G278700.1	Wheat	cytosol	84.21	84.21
TraesCS5A01G279400.1	Wheat	unclear	84.21	84.21
Solyc02g070310.2.1	Tomato	nucleus, plastid	83.46	83.46
PGSC0003DMT400054361	Potato	cytosol	47.37	82.89
HORVU7Hr1G052800.8	Barley	cytosol	82.71	82.71
PGSC0003DMT400005838	Potato	cytosol	82.71	82.71
AT4G18100.1	Thale cress	cytosol	81.2	81.2
Bra012616.1-P	Field mustard	cytosol	81.2	81.2
Bra013284.1-P	Field mustard	cytosol	81.2	81.2
Bra021023.1-P	Field mustard	cytosol	81.2	81.2
CDX76545	Canola	cytosol	81.2	81.2
CDX77662	Canola	cytosol	81.2	81.2
CDX78825	Canola	cytosol	81.2	81.2
CDX90420	Canola	cytosol	81.2	81.2
CDY01520	Canola	extracellular	81.2	81.2
CDY03219	Canola	cytosol	81.2	81.2
CDY08886	Canola	cytosol	81.2	81.2
CDY33476	Canola	cytosol	81.2	81.2
CDY35163	Canola	cytosol	81.2	81.2
CDY61673	Canola	cytosol	81.2	81.2
Bra017545.1-P	Field mustard	cytosol	80.45	80.45
AT5G46430.1	Thale cress	cytosol	78.95	78.95
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	86.47	77.7
HORVU5Hr1G075500.3	Barley	cytosol	84.21	76.19
HORVU5Hr1G075420.2	Barley	plastid	85.71	74.51
KRH12807	Soybean	cytosol	59.4	73.83
GSMUA_Achr6P12040_001	Banana	cytosol	90.23	73.62
Zm00001d021018_P002	Maize	cytosol	84.96	72.9
TraesCS7A01G256300.1	Wheat	cytosol	87.22	71.17
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	86.47	70.55
Os09t0501700-00	Rice	nucleus	85.71	67.06
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	86.47	66.09
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	86.47	66.09
Zm00001d031560_P001	Maize	plastid	84.96	55.12
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	81.95	28.84

Protein Annotations

EntrezGene:100499846	MapMan:17.1.2.1.33	EMBL:ACUP02009394	EMBL:BT089808	UniProt:C6SXB4	ncoils:Coil
EnsemblPlantsGene:GLYMA_15G195500	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	EnsemblPlants:KRH12802
ProteinID:KRH12802	ProteinID:KRH12802.1	PFAM:PD003823	PFAM:PF01655	PANTHER:PTHR23413	InterPro:Ribosomal_L32e
InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	UniParc:UPI0001B152A6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:22368017..22369973

Molecular Weight (calculated)

15600.3 Da

IEP (calculated)

11.463

GRAVY (calculated)

-0.759

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLSKRI VKKRVKKFIR PQSDRKISVK PSWRRPKGID SRVRRKFKGC TLMPNIGYGS DKKTRHYLPN GFKKFVVHNV KDLELLMMHN RTYCAEIAHN
101: VSTRKRKDIV ERAAQLDVVL TNKTARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.