Factsheet for Bra017545.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018084.1-P
Bra019524.1-P
Bra033773.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	Bra018084.1-P	AT3G48100.1	18642946
AT5G46430.1	Bra019524.1-P	AT3G48100.1	18642946
AT5G46430.1	Bra033773.1-P	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03219	Canola	cytosol	99.25	99.25
Bra012616.1-P	Field mustard	cytosol	97.74	97.74
Bra013284.1-P	Field mustard	cytosol	97.74	97.74
Bra021023.1-P	Field mustard	cytosol	97.74	97.74
AT5G46430.1	Thale cress	cytosol	92.48	92.48
Solyc02g070310.2.1	Tomato	nucleus, plastid	85.71	85.71
PGSC0003DMT400005838	Potato	cytosol	84.96	84.96
GSMUA_Achr10P...	Banana	cytosol	81.95	81.95
Solyc08g006900.2.1	Tomato	nucleus	81.2	81.2
KRH18320	Soybean	endoplasmic reticulum	81.2	81.2
GSMUA_Achr7P19740_001	Banana	cytosol	81.2	81.2
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	25.56	80.95
PGSC0003DMT400022579	Potato	cytosol	80.45	80.45
Os09t0502000-01	Rice	nucleus	80.45	80.45
KRH12802	Soybean	cytosol	80.45	80.45
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	80.45	80.45
PGSC0003DMT400054361	Potato	cytosol	45.86	80.26
KRH31095	Soybean	nucleus	79.7	79.7
KRH42824	Soybean	cytosol, plastid	79.7	79.7
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	79.7	79.7
KRH58920	Soybean	cytosol, plastid	79.7	79.7
KRH67946	Soybean	endoplasmic reticulum	79.7	79.7
KRH42825	Soybean	nucleus	78.95	78.95
Os09t0501200-01	Rice	nucleus	78.95	78.95
EES15331	Sorghum	cytosol	78.95	78.95
TraesCS7B01G152900.1	Wheat	golgi, unclear	78.95	78.95
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	78.95	78.36
Zm00001d049790_P007	Maize	cytosol	78.2	78.2
Zm00001d021020_P001	Maize	mitochondrion, plastid	78.2	78.2
EER97002	Sorghum	cytosol	77.44	77.44
TraesCS5A01G279100.1	Wheat	golgi	77.44	77.44
EER99136	Sorghum	cytosol	77.44	77.44
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	77.44	77.44
Zm00001d006064_P002	Maize	cytosol	76.69	76.12
HORVU7Hr1G052800.8	Barley	cytosol	75.19	75.19
TraesCS5A01G279400.1	Wheat	unclear	75.19	75.19
TraesCS5B01G278700.1	Wheat	cytosol	75.19	75.19
TraesCS5D01G286400.1	Wheat	cytosol	75.19	75.19
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	78.95	70.95
HORVU5Hr1G075500.3	Barley	cytosol	75.19	68.03
KRH12807	Soybean	cytosol	54.14	67.29
GSMUA_Achr6P12040_001	Banana	cytosol	81.95	66.87
HORVU5Hr1G075420.2	Barley	plastid	76.69	66.67
Zm00001d021018_P002	Maize	cytosol	76.69	65.81
TraesCS7A01G256300.1	Wheat	cytosol	79.7	65.03
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	78.95	64.42
Os09t0501700-00	Rice	nucleus	79.7	62.35
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	77.44	59.2
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	77.44	59.2
Zm00001d031560_P001	Maize	plastid	78.2	50.73
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	81.95	28.84

Protein Annotations

MapMan:17.1.2.1.33	EnsemblPlantsGene:Bra017545	EnsemblPlants:Bra017545.1	EnsemblPlants:Bra017545.1-P	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	UniProt:M4DM14	PFAM:PD003823	PFAM:PF01655	ScanProsite:PS00580
PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS	InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042
UniParc:UPI00025424C3	:	:	:	:	:

Description

AT4G18100 (E=4e-070) | 60S ribosomal protein L32 (RPL32A)

Coordinates

chrA09:-:16243086..16243898

Molecular Weight (calculated)

15470.1 Da

IEP (calculated)

11.539

GRAVY (calculated)

-0.701

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKPRHYLPN GFKKFVVHNS ADLELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDIVV TNRLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.