CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	KRH03376	AT3G48100.1	18642946
AT5G46430.1	KRH54462	AT3G48100.1	18642946
AT5G46430.1	KRH57009	AT3G48100.1	18642946
AT5G46430.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31095	Soybean	nucleus	98.5	98.5
KRH42824	Soybean	cytosol, plastid	98.5	98.5
KRH58920	Soybean	cytosol, plastid	98.5	98.5
KRH67946	Soybean	endoplasmic reticulum	97.74	97.74
KRH18320	Soybean	endoplasmic reticulum	94.74	94.74
KRH12802	Soybean	cytosol	93.98	93.98
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	93.23	93.23
GSMUA_Achr7P19740_001	Banana	cytosol	90.98	90.98
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	89.47	89.47
GSMUA_Achr10P...	Banana	cytosol	89.47	89.47
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	27.82	88.1
Os09t0501200-01	Rice	nucleus	86.47	86.47
Os09t0502000-01	Rice	nucleus	86.47	86.47
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	86.47	85.82
PGSC0003DMT400022579	Potato	cytosol	85.71	85.71
Solyc08g006900.2.1	Tomato	nucleus	84.96	84.96
TraesCS5A01G279100.1	Wheat	golgi	84.96	84.96
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	84.96	84.96
TraesCS7B01G152900.1	Wheat	golgi, unclear	84.96	84.96
EER97002	Sorghum	cytosol	84.21	84.21
HORVU7Hr1G052800.8	Barley	cytosol	84.21	84.21
Zm00001d049790_P007	Maize	cytosol	83.46	83.46
Zm00001d021020_P001	Maize	mitochondrion, plastid	83.46	83.46
Zm00001d006064_P002	Maize	cytosol	83.46	82.84
EES15331	Sorghum	cytosol	82.71	82.71
EER99136	Sorghum	cytosol	82.71	82.71
TraesCS5D01G286400.1	Wheat	cytosol	82.71	82.71
TraesCS5B01G278700.1	Wheat	cytosol	82.71	82.71
TraesCS5A01G279400.1	Wheat	unclear	82.71	82.71
Solyc02g070310.2.1	Tomato	nucleus, plastid	80.45	80.45
CDX77662	Canola	cytosol	79.7	79.7
AT4G18100.1	Thale cress	cytosol	79.7	79.7
Bra012616.1-P	Field mustard	cytosol	79.7	79.7
Bra013284.1-P	Field mustard	cytosol	79.7	79.7
Bra021023.1-P	Field mustard	cytosol	79.7	79.7
CDX76545	Canola	cytosol	79.7	79.7
CDX78825	Canola	cytosol	79.7	79.7
CDX90420	Canola	cytosol	79.7	79.7
CDY61673	Canola	cytosol	79.7	79.7
CDY35163	Canola	cytosol	79.7	79.7
CDY33476	Canola	cytosol	79.7	79.7
CDY08886	Canola	cytosol	79.7	79.7
CDY03219	Canola	cytosol	79.7	79.7
CDY01520	Canola	extracellular	79.7	79.7
PGSC0003DMT400005838	Potato	cytosol	79.7	79.7
AT5G46430.1	Thale cress	cytosol	78.95	78.95
Bra017545.1-P	Field mustard	cytosol	78.95	78.95
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	86.47	77.7
PGSC0003DMT400054361	Potato	cytosol	43.61	76.32
GSMUA_Achr6P12040_001	Banana	cytosol	91.73	74.85
HORVU5Hr1G075500.3	Barley	cytosol	82.71	74.83
HORVU5Hr1G075420.2	Barley	plastid	84.21	73.2
KRH12807	Soybean	cytosol	57.89	71.96
Zm00001d021018_P002	Maize	cytosol	83.46	71.61
TraesCS7A01G256300.1	Wheat	cytosol	86.47	70.55
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	85.71	69.94
Os09t0501700-00	Rice	nucleus	85.71	67.06
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	84.96	64.94
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	84.96	64.94
Zm00001d031560_P001	Maize	plastid	83.46	54.15
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	78.95	27.78

Protein Annotations

EntrezGene:100802667	MapMan:17.1.2.1.33	UniProt:A0A0R0IQB1	EMBL:ACUP02004832	EnsemblPlantsGene:GLYMA_08G114100	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlants:KRH42825	ProteinID:KRH42825	ProteinID:KRH42825.1	PFAM:PD003823	PFAM:PF01655
PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	UniParc:UPI0002338F67
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:8739897..8741987

Molecular Weight (calculated)

15646.4 Da

IEP (calculated)

11.406

GRAVY (calculated)

-0.813

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLSKKI VKKRLKKFKR PQSDRKISVK TNWRRPKGID SRVRRKFKGC TLMPNIGYAS DKKTRHYLPN GFKKFVVHNV KDLELLMMHN RTYCAEIAHN
101: ISTRKRKDIV ERAAQLDVVV TNKTARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.