CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	CDY21807	AT3G48100.1	18642946
AT5G46430.1	CDY36905	AT3G48100.1	18642946
AT5G46430.1	CDY54257	AT3G48100.1	18642946
AT5G46430.1	CDY59856	AT3G48100.1	18642946
AT5G46430.1	CDY68129	AT3G48100.1	18642946
AT5G46430.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77662	Canola	cytosol	100.0	100.0
CDY33476	Canola	cytosol	100.0	100.0
Bra017545.1-P	Field mustard	cytosol	99.25	99.25
CDX76545	Canola	cytosol	98.5	98.5
CDX78825	Canola	cytosol	98.5	98.5
CDX90420	Canola	cytosol	98.5	98.5
CDY01520	Canola	extracellular	98.5	98.5
CDY08886	Canola	cytosol	98.5	98.5
CDY35163	Canola	cytosol	98.5	98.5
CDY61673	Canola	cytosol	98.5	98.5
AT5G46430.1	Thale cress	cytosol	93.23	93.23
Solyc02g070310.2.1	Tomato	nucleus, plastid	86.47	86.47
PGSC0003DMT400005838	Potato	cytosol	85.71	85.71
GSMUA_Achr10P...	Banana	cytosol	82.71	82.71
Solyc08g006900.2.1	Tomato	nucleus	81.95	81.95
GSMUA_Achr7P19740_001	Banana	cytosol	81.95	81.95
KRH18320	Soybean	endoplasmic reticulum	81.95	81.95
PGSC0003DMT400054361	Potato	cytosol	46.62	81.58
PGSC0003DMT400022579	Potato	cytosol	81.2	81.2
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	81.2	81.2
Os09t0502000-01	Rice	nucleus	81.2	81.2
KRH12802	Soybean	cytosol	81.2	81.2
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	25.56	80.95
KRH58920	Soybean	cytosol, plastid	80.45	80.45
KRH67946	Soybean	endoplasmic reticulum	80.45	80.45
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	80.45	80.45
KRH42824	Soybean	cytosol, plastid	80.45	80.45
KRH31095	Soybean	nucleus	80.45	80.45
KRH42825	Soybean	nucleus	79.7	79.7
TraesCS7B01G152900.1	Wheat	golgi, unclear	79.7	79.7
Os09t0501200-01	Rice	nucleus	79.7	79.7
EES15331	Sorghum	cytosol	79.7	79.7
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	79.7	79.1
Zm00001d049790_P007	Maize	cytosol	78.95	78.95
Zm00001d021020_P001	Maize	mitochondrion, plastid	78.95	78.95
EER99136	Sorghum	cytosol	78.2	78.2
EER97002	Sorghum	cytosol	78.2	78.2
TraesCS5A01G279100.1	Wheat	golgi	78.2	78.2
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	78.2	78.2
Zm00001d006064_P002	Maize	cytosol	77.44	76.87
HORVU7Hr1G052800.8	Barley	cytosol	75.94	75.94
TraesCS5A01G279400.1	Wheat	unclear	75.94	75.94
TraesCS5B01G278700.1	Wheat	cytosol	75.94	75.94
TraesCS5D01G286400.1	Wheat	cytosol	75.94	75.94
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	79.7	71.62
HORVU5Hr1G075500.3	Barley	cytosol	75.94	68.71
KRH12807	Soybean	cytosol	54.89	68.22
GSMUA_Achr6P12040_001	Banana	cytosol	82.71	67.48
HORVU5Hr1G075420.2	Barley	plastid	77.44	67.32
Zm00001d021018_P002	Maize	cytosol	77.44	66.45
TraesCS7A01G256300.1	Wheat	cytosol	80.45	65.64
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	79.7	65.03
Os09t0501700-00	Rice	nucleus	80.45	62.94
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	78.2	59.77
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	78.2	59.77
Zm00001d031560_P001	Maize	plastid	78.95	51.22
CDY28057	Canola	cytosol	39.85	38.69
CDY35926	Canola	cytosol	34.59	37.4
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	82.71	29.1

Protein Annotations

MapMan:17.1.2.1.33	GO:A0A078H6H8	UniProt:A0A078H6H8	EnsemblPlants:CDY03219	ProteinID:CDY03219	ProteinID:CDY03219.1
ProteinID:CDY33476.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00115727001	PFAM:PD003823	PFAM:PF01655
ScanProsite:PS00580	PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS	InterPro:Ribosomal_L32e_sf	SMART:SM01393
SUPFAM:SSF52042	UniParc:UPI0001BA840D	:	:	:	:

Description

BnaC09g19370DBnaA06g35970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6H8]

Coordinates

chrLK031941:-:843877..844919

Molecular Weight (calculated)

15474.1 Da

IEP (calculated)

11.539

GRAVY (calculated)

-0.694

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNS ADLELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDIVV TNRLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.