CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	23.58	69.05
CDY28057	Canola	cytosol	65.85	59.12
EES15331	Sorghum	cytosol	39.84	36.84
Zm00001d049790_P007	Maize	cytosol	39.02	36.09
Zm00001d021020_P001	Maize	mitochondrion, plastid	39.02	36.09
Os09t0502000-01	Rice	nucleus	39.02	36.09
EER97002	Sorghum	cytosol	38.21	35.34
EER99136	Sorghum	cytosol	38.21	35.34
TraesCS7B01G152900.1	Wheat	golgi, unclear	38.21	35.34
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	38.21	35.34
TraesCS5D01G286400.1	Wheat	cytosol	38.21	35.34
TraesCS5B01G278700.1	Wheat	cytosol	38.21	35.34
TraesCS5A01G279400.1	Wheat	unclear	38.21	35.34
TraesCS5A01G279100.1	Wheat	golgi	38.21	35.34
Os09t0501200-01	Rice	nucleus	38.21	35.34
Zm00001d006064_P002	Maize	cytosol	38.21	35.07
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	38.21	35.07
VIT_00s0260g00080.t01	Wine grape	cytosol	38.21	34.81
CDX78825	Canola	cytosol	37.4	34.59
CDX76545	Canola	cytosol	37.4	34.59
CDX77662	Canola	cytosol	37.4	34.59
CDY08886	Canola	cytosol	37.4	34.59
CDY03219	Canola	cytosol	37.4	34.59
CDY33476	Canola	cytosol	37.4	34.59
GSMUA_Achr7P19740_001	Banana	cytosol	37.4	34.59
CDY35163	Canola	cytosol	37.4	34.59
CDX90420	Canola	cytosol	37.4	34.59
GSMUA_Achr10P...	Banana	cytosol	37.4	34.59
CDY01520	Canola	extracellular	37.4	34.59
CDY61673	Canola	cytosol	37.4	34.59
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	36.59	33.83
HORVU7Hr1G052800.8	Barley	cytosol	34.96	32.33
HORVU5Hr1G075500.3	Barley	cytosol	38.21	31.97
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	38.21	31.76
HORVU5Hr1G075420.2	Barley	plastid	38.21	30.72
Zm00001d021018_P002	Maize	cytosol	38.21	30.32
TraesCS7A01G256300.1	Wheat	cytosol	38.21	28.83
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	38.21	28.83
Os09t0501700-00	Rice	nucleus	38.21	27.65
GSMUA_Achr6P12040_001	Banana	cytosol	36.59	27.61
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	38.21	27.01
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	38.21	27.01
Zm00001d031560_P001	Maize	plastid	39.02	23.41

Protein Annotations

MapMan:35.2	GO:A0A078HDR9	UniProt:A0A078HDR9	EnsemblPlants:CDY35926	ProteinID:CDY35926	ProteinID:CDY35926.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00059479001	PFAM:PD003823	PFAM:PF01655	PANTHER:PTHR23413
InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	UniParc:UPI0004EF27AA	SEG:seg

Description

BnaA05g30240DBnaA05g30240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDR9]

Coordinates

chrLK032364:-:28507..29795

Molecular Weight (calculated)

13959.0 Da

IEP (calculated)

10.580

GRAVY (calculated)

-0.279

Length

123 amino acids

Sequence
(BLAST)

001: MCVDSRVQRK FRGYVLTPNI GYGPHKTRYS YYTFVTRSCL LHGNFEDGLT RCEVIAHNVS TKKRKEIVER ASQLDVVVSN SLARSNGGGR ILRVEKKKYL
101: LELRSLFSSI LFSIQISPKV SSG

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.